View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5176_low_43 (Length: 255)
Name: NF5176_low_43
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5176_low_43 |
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| [»] scaffold0219 (1 HSPs) |
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Alignment Details
Target: scaffold0219 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: scaffold0219
Description:
Target: scaffold0219; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 8513 - 8755
Alignment:
| Q |
13 |
aatatctagagggtactaaaccaaaaccttatcaagaaaacatggtgaaggaaaacaaagtgtggttttatacaacacaactagcaacaagaccaaactc |
112 |
Q |
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| T |
8513 |
aatatctagagggtactaaaccaaaaccttatcaagaaaacatggtgaaggaaaacaaagtgtggttttatacaacacaactagcaacaagaccaaactc |
8612 |
T |
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| Q |
113 |
aaaatcatcatttcaatcaataattaaatagactcgatctatttctagagtatccttctttgatgcacattggtaacaaaacctaccaaactaaatcaat |
212 |
Q |
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| T |
8613 |
aaaatcatcatttcaatcaataattaaatagactcggtctatttctagagtatccttctttgatgcacattggtaacaaaacctaccaaactaaatcaat |
8712 |
T |
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| Q |
213 |
tatttgaaaatcaaaattagctaatttttccgcacacgtgtta |
255 |
Q |
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| T |
8713 |
tatttgaaaatcaaaattagctaatttttccgcacacgtgtta |
8755 |
T |
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