View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5176_low_46 (Length: 252)

Name: NF5176_low_46
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5176_low_46
NF5176_low_46
[»] scaffold0277 (4 HSPs)
scaffold0277 (84-241)||(5693-5850)
scaffold0277 (86-241)||(14209-14366)
scaffold0277 (1-56)||(5610-5665)
scaffold0277 (1-54)||(14125-14178)
[»] chr6 (9 HSPs)
chr6 (86-241)||(28780592-28780749)
chr6 (1-54)||(28780780-28780833)
chr6 (5-56)||(27699242-27699293)
chr6 (5-56)||(27719492-27719543)
chr6 (5-56)||(27725712-27725763)
chr6 (15-56)||(27594029-27594070)
chr6 (13-56)||(27532570-27532613)
chr6 (5-46)||(26801659-26801700)
chr6 (13-56)||(27228478-27228521)
[»] scaffold0349 (2 HSPs)
scaffold0349 (5-56)||(4288-4339)
scaffold0349 (5-56)||(8914-8965)


Alignment Details
Target: scaffold0277 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 84 - 241
Target Start/End: Original strand, 5693 - 5850
Alignment:
Q  84 tttgtcaccttgtaacctataagcagaccatgtcactttgtttatctatnnnnnnnnnnnnnctgactaattaataaataacttattaagcttgatccca 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||    
T  5693 tttgtcaccttgtaacctataagcagaccatgtcactttgtttatctataaaaaaataaaaactgactaattaataaataacttattaagcttgatccca 5792  T
Q  184 agaaatcatcttaatggggggacacggttctttgcttccaattttaccctgtattcat 241  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5793 agaaatcatcttaatggggggacacggttctttgcttcctattttaccctgtattcat 5850  T

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Target: scaffold0277; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 86 - 241
Target Start/End: Original strand, 14209 - 14366
Alignment:
Q  86 tgtcaccttgtaacctataagcagaccatgtcactttgtttatctatnnnnnnnnnnnnnctgactaattaataaataacttattaagcttgatcccaag 185  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||              |||||||||||||||||| |||||||||||||||||||     
T  14209 tgtcaccttgtaacctatacgcagaccatgtcactttgtttatctataaaaaaataaaaaatgactaattaataaataatttattaagcttgatcccaaa 14308  T
Q  186 aaatcatcttaat--ggggggacacggttctttgcttccaattttaccctgtattcat 241  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||    
T  14309 aaatcatcttaatggggggggacacggttctttgcttccaattttaccctgtaatcat 14366  T

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Target: scaffold0277; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 5610 - 5665
Alignment:
Q  1 aagcaaccatctcatccttcttccatgtaatttctttaaagcaatgtcaatgtctt 56  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5610 aagcaaccatctcatccttcttccatgtaatttctttaaagcaatgtcaatgtctt 5665  T

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Target: scaffold0277; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 14125 - 14178
Alignment:
Q  1 aagcaaccatctcatccttcttccatgtaatttctttaaagcaatgtcaatgtc 54  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  14125 aagcaaccatctcatccttcttccatgtaatttctttaaagcaatatgaatgtc 14178  T

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Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 86 - 241
Target Start/End: Complemental strand, 28780749 - 28780592
Alignment:
Q  86 tgtcaccttgtaacctataagcagaccatgtcactttgtttatctatnnnnnnnnnnnnnctgactaattaataaataacttattaagcttgatcccaag 185  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||              |||||||||||||||||| |||||||||||||||||||     
T  28780749 tgtcaccttgtaacctatacgcagaccatgtcactttgtttatctataaaaaaataaaaaatgactaattaataaataatttattaagcttgatcccaaa 28780650  T
Q  186 aaatcatcttaatgg--ggggacacggttctttgcttccaattttaccctgtattcat 241  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||    
T  28780649 aaatcatcttaatggggggggacacggttctttgcttccaattttaccctgtaatcat 28780592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 28780833 - 28780780
Alignment:
Q  1 aagcaaccatctcatccttcttccatgtaatttctttaaagcaatgtcaatgtc 54  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  28780833 aagcaaccatctcatccttcttccatgtaatttctttaaagcaatatgaatgtc 28780780  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 27699242 - 27699293
Alignment:
Q  5 aaccatctcatccttcttccatgtaatttctttaaagcaatgtcaatgtctt 56  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  27699242 aaccatcacatccttcttccatgtaatttctttagagcaatgtcaatgtctt 27699293  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 27719492 - 27719543
Alignment:
Q  5 aaccatctcatccttcttccatgtaatttctttaaagcaatgtcaatgtctt 56  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  27719492 aaccatcacatccttcttccatgtaatttcgttaaagcaatgtcaatgtctt 27719543  T

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Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 27725712 - 27725763
Alignment:
Q  5 aaccatctcatccttcttccatgtaatttctttaaagcaatgtcaatgtctt 56  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  27725712 aaccatcacatccttcttccatgtaatttctttagagcaatgtcaatgtctt 27725763  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 27594029 - 27594070
Alignment:
Q  15 tccttcttccatgtaatttctttaaagcaatgtcaatgtctt 56  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  27594029 tccttcttccatgtaatttctttaaagcaatgtgaatgtctt 27594070  T

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Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 27532570 - 27532613
Alignment:
Q  13 catccttcttccatgtaatttctttaaagcaatgtcaatgtctt 56  Q
    |||||||||||||||||||||||||||||||| || ||||||||    
T  27532570 catccttcttccatgtaatttctttaaagcaacgtgaatgtctt 27532613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 26801700 - 26801659
Alignment:
Q  5 aaccatctcatccttcttccatgtaatttctttaaagcaatg 46  Q
    ||||||||||||||||||||||||||||||  ||||||||||    
T  26801700 aaccatctcatccttcttccatgtaatttcagtaaagcaatg 26801659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 27228521 - 27228478
Alignment:
Q  13 catccttcttccatgtaatttctttaaagcaatgtcaatgtctt 56  Q
    |||||| |||||||||||||||||||||| ||||| ||||||||    
T  27228521 catcctccttccatgtaatttctttaaagtaatgtgaatgtctt 27228478  T

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Target: scaffold0349 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 4288 - 4339
Alignment:
Q  5 aaccatctcatccttcttccatgtaatttctttaaagcaatgtcaatgtctt 56  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  4288 aaccatcacatccttcttccatgtaatttctttagagcaatgtcaatgtctt 4339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 8914 - 8965
Alignment:
Q  5 aaccatctcatccttcttccatgtaatttctttaaagcaatgtcaatgtctt 56  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  8914 aaccatcacatccttcttccatgtaatttcgttaaagcaatgtcaatgtctt 8965  T

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