View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5176_low_47 (Length: 252)
Name: NF5176_low_47
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5176_low_47 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 15 - 239
Target Start/End: Complemental strand, 42207280 - 42207056
Alignment:
| Q |
15 |
gaggcttagaggactataaggattctcagatatcattgaacctgaaagccattcagagtcttcctcttcaagacttagtaaagaattcgagtaacttgct |
114 |
Q |
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| T |
42207280 |
gaggcttagaggactataaggattctcagatatcattgaacctgaaagccattcagagtcttcctcttcaagacttagtaaagaattcgagtaacttgct |
42207181 |
T |
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| Q |
115 |
ttgtccaaaatccaatcactgtcttcctctttaagttttagcaaggagtcccggtaacttggtgtgcctatgtctgagatctcactaaaagaatcaccaa |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42207180 |
ttgtccaaaatccaatcactgtcttcctctttaagttttagcaagtagtcccggtaacttggtgtgcctatgtctgagatctcactaaaagaatcaccaa |
42207081 |
T |
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| Q |
215 |
tgtagcttagaggagttgaaggatt |
239 |
Q |
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||||||||||||||||||||||||| |
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| T |
42207080 |
tgtagcttagaggagttgaaggatt |
42207056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 42214107 - 42213889
Alignment:
| Q |
18 |
gcttagaggactataaggattctcagatatcattgaacctgaaagccattcagagtcttcctcttcaagacttagtaaagaattcgagtaacttgctttg |
117 |
Q |
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| T |
42214107 |
gcttagaggactagaaggattctcagataccattgaatctgaaagccattcagagtcttcctcttcaagacttagtaaagaatgcgagtaacttgcttta |
42214008 |
T |
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| Q |
118 |
tccaaaatccaatcactgtcttcctctttaagttttagcaaggagtcccggtaacttggtgtgcctatgtctgagatctcactaaaagaatcaccaatgt |
217 |
Q |
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| T |
42214007 |
tccaaaatccaatcactgtcttcctcttcaaatttgagcaaggagttccaataacttggtgtacccacatctgagatctcgcagaaagaatcgtgagagt |
42213908 |
T |
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| Q |
218 |
agcttagaggagttgaagg |
236 |
Q |
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| T |
42213907 |
agcttagaggagttgaagg |
42213889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 42214308 - 42214087
Alignment:
| Q |
18 |
gcttagaggactataaggattctcagatatcattgaacctgaaagccattcagagtcttcctcttcaagacttagtaaagaattcgagtaacttgctttg |
117 |
Q |
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|||||||||||| |||| | |||||| ||||||||| |||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
42214308 |
gcttagaggactggaagggtcctcagagatcattgaatctgagagccatgcagagtcttcctcttcaagacttagtaaagaatgcgagtaacttgctttg |
42214209 |
T |
|
| Q |
118 |
tccaaaatccaatcactgtcttcctctttaagttttagcaaggagtcccggtaacttggtgtgcctatgtctgagatctcactaaaagaatcaccaatgt |
217 |
Q |
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| T |
42214208 |
tccaaaatccacacattgtcttcctcttcaagtttgagcaaggagtcccagtaacttggcaagcctacgtctgagatcttgctgaaagaatcaccattgt |
42214109 |
T |
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| Q |
218 |
agcttagaggagttgaaggatt |
239 |
Q |
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| T |
42214108 |
agcttagaggactagaaggatt |
42214087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 46 - 228
Target Start/End: Complemental strand, 42207447 - 42207268
Alignment:
| Q |
46 |
atcattgaacctgaaagccattcagagtcttcctcttcaagacttagtaaagaattcgagtaacttgctttgtccaaaatccaatcactgtcttcctctt |
145 |
Q |
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||||||||| |||| |||||| ||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||| || ||||||| || |
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| T |
42207447 |
atcattgaatctgagagccatgcagagtcttcctcttcaagacttagtaaagaatgcgtataacttgctctgtccaaaatccacacattgtcttcgtc-- |
42207350 |
T |
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| Q |
146 |
taagttttagcaaggagtcccggtaacttggtgtgcctatgtctgagatctcactaaaagaatcaccaatgtagcttagagga |
228 |
Q |
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| T |
42207349 |
-aagtttgatcaaggactcccagtaacttggcaagcctatgtccgagatcttgctgaaagaatcaccactgaggcttagagga |
42207268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 122 - 228
Target Start/End: Complemental strand, 42214405 - 42214299
Alignment:
| Q |
122 |
aaatccaatcactgtcttcctctttaagttttagcaaggagtcccggtaacttggtgtgcctatgtctgagatctcactaaaagaatcaccaatgtagct |
221 |
Q |
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||||||| ||| ||||||||| || |||| | ||||||||||||| |||||| |||||||||| |||||||| || | |||||| ||||| || |||| |
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| T |
42214405 |
aaatccactcattgtcttccttttcaagtctgagcaaggagtcccagtaactaggtgtgcctacatctgagatatcggtgaaagaaccaccattggagct |
42214306 |
T |
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| Q |
222 |
tagagga |
228 |
Q |
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||||||| |
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| T |
42214305 |
tagagga |
42214299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 42213906 - 42213826
Alignment:
| Q |
18 |
gcttagaggactataaggattctcagatatcattgaacctgaaagccattcagagtcttcctcttcaagacttagtaaaga |
98 |
Q |
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|||||||||| | |||| |||||||||||||||||| |||| |||||| || ||||||||| ||||||||||| ||||| |
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| T |
42213906 |
gcttagaggagttgaagggttctcagatatcattgaatctgagagccatccattgtcttcctcgtcaagacttagcaaaga |
42213826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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