View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5176_low_5 (Length: 583)

Name: NF5176_low_5
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5176_low_5
NF5176_low_5
[»] chr2 (17 HSPs)
chr2 (18-484)||(6915171-6915637)
chr2 (233-331)||(10543505-10543603)
chr2 (233-331)||(10471307-10471405)
chr2 (233-331)||(28106207-28106305)
chr2 (251-331)||(27966389-27966469)
chr2 (233-331)||(10859023-10859121)
chr2 (344-400)||(10492777-10492833)
chr2 (343-395)||(28105350-28105402)
chr2 (337-400)||(10463585-10463648)
chr2 (337-384)||(10507349-10507396)
chr2 (349-400)||(10860707-10860758)
chr2 (338-400)||(10474161-10474223)
chr2 (344-400)||(7476566-7476622)
chr2 (349-400)||(10848803-10848854)
chr2 (252-314)||(9081351-9081413)
chr2 (343-400)||(7478731-7478788)
chr2 (260-324)||(10505487-10505551)
[»] chr3 (1 HSPs)
chr3 (490-563)||(34239998-34240071)
[»] chr7 (5 HSPs)
chr7 (233-331)||(15044800-15044898)
chr7 (146-236)||(15043971-15044061)
chr7 (333-404)||(15045570-15045641)
chr7 (86-148)||(15043792-15043854)
chr7 (431-484)||(15047553-15047606)
[»] chr8 (1 HSPs)
chr8 (348-399)||(44307022-44307073)
[»] chr5 (1 HSPs)
chr5 (233-331)||(33601026-33601124)


Alignment Details
Target: chr2 (Bit Score: 435; Significance: 0; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 18 - 484
Target Start/End: Complemental strand, 6915637 - 6915171
Alignment:
Q  18 cagcatgggcctcttcaatgtcattcatctcattagaatgcatctcaactaagcgaggaaccttaattttctttccagtgctaacattaacaataaaatc 117  Q
    |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6915637 cagcatgggcctcttcaatgtcgttcatctcattagaatgcatctgaactaagcgaggaaccttaattttctttccagtgctaacattaacaataaaatc 6915538  T
Q  118 acccttccgaatgacgccctcataaactcttagatatgttaactgaccaaacttcctttgctccaacttgaaagccaatgctacaaggggcccatcggga 217  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  6915537 acccttccgaatgacaccctcataaactcttagatatgttaactgaccaaacttcgtttgctccaacttgaaagccaatgctacaagaggcccatcggga 6915438  T
Q  218 cttccagtcagctgaaccttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6915437 cttccagtcagctgaaccttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataactaactacaccatccagaa 6915338  T
Q  318 gtggttgtacccccgtgtttttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgctccctcaaggtcagcagc 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6915337 gtggttgtacccccgtgtttttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgctccctcaaggtcagcagc 6915238  T
Q  418 tgaaatgttctcatcatcgctaagaaacgcttcagcaagtacatcatctacctctgacacaggttct 484  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6915237 tgaaatgttctcatcatcactaagaaacgcttcagcaagtacatcatctacctctgacacagtttct 6915171  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 233 - 331
Target Start/End: Original strand, 10543505 - 10543603
Alignment:
Q  233 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 331  Q
    ||||| |||||||||||||||||| | ||||||||||||||| ||||| | ||||| ||||||||| ||| ||||||||||| |||| |||||| ||||    
T  10543505 accttttcctcattcttggattggacgagagcataattactagcttcagttggacacggcaaataattaagtacaccatccaaaagtagttgtaacccc 10543603  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 233 - 331
Target Start/End: Original strand, 10471307 - 10471405
Alignment:
Q  233 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 331  Q
    ||||| ||||||||||| |||||| | ||||||||||||||| ||||| | ||||| ||||||||| ||| ||||||||||| |||| |||||| ||||    
T  10471307 accttttcctcattcttagattggacgagagcataattactagcttcagttggacacggcaaataattaagtacaccatccaaaagtagttgtagcccc 10471405  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 233 - 331
Target Start/End: Complemental strand, 28106305 - 28106207
Alignment:
Q  233 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 331  Q
    ||||| ||| ||| ||| ||||||||||||| |||||||||| ||||||| ||||| ||||||||| ||| ||||||||||| |||| |||||| ||||    
T  28106305 accttttccccatgcttagattggtcaagagtataattactagcttcaattggacacggcaaataattaattacaccatccaaaagtagttgtagcccc 28106207  T

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Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 251 - 331
Target Start/End: Original strand, 27966389 - 27966469
Alignment:
Q  251 gattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 331  Q
    ||||||||||||| |||||||||| ||||||| ||||| ||||||||| ||| ||||||||||| |||| |||||| ||||    
T  27966389 gattggtcaagagtataattactagcttcaattggacacggcaaataattaattacaccatccaaaagtagttgtagcccc 27966469  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 233 - 331
Target Start/End: Original strand, 10859023 - 10859121
Alignment:
Q  233 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 331  Q
    ||||| ||| ||||||| |||| ||| |||| |||||||||||||||| | ||||| ||||||||| ||  ||||||||||| |||| |||||| ||||    
T  10859023 accttttccccattcttagatttgtcgagagaataattactaacttcagttggacagggcaaataattagttacaccatccaaaagtagttgtagcccc 10859121  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 344 - 400
Target Start/End: Original strand, 10492777 - 10492833
Alignment:
Q  344 gcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 400  Q
    |||||||||||||| ||||||| ||||||  |||||||||| |||||||||||||||    
T  10492777 gcactacccatgaaaaccggtacaaatttatgtgctatggttgccctacgaattgct 10492833  T

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Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 395
Target Start/End: Complemental strand, 28105402 - 28105350
Alignment:
Q  343 agcactacccatgaataccggtataaatttccgtgctatggtagccctacgaa 395  Q
    |||| ||||||||||||| |||||||| |||||||||||||| ||||||||||    
T  28105402 agcattacccatgaatactggtataaacttccgtgctatggtggccctacgaa 28105350  T

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Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 337 - 400
Target Start/End: Original strand, 10463585 - 10463648
Alignment:
Q  337 tttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 400  Q
    ||||| ||||||||||||||| |  |||||||||||||||||||| || || ||||||||||||    
T  10463585 tttgaaagcactacccatgaaaaatggtataaatttccgtgctatcgtggctctacgaattgct 10463648  T

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Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 337 - 384
Target Start/End: Original strand, 10507349 - 10507396
Alignment:
Q  337 tttgacagcactacccatgaataccggtataaatttccgtgctatggt 384  Q
    ||||| |||||| ||||||||||| |||||||||||||||||||||||    
T  10507349 tttgaaagcactgcccatgaatacgggtataaatttccgtgctatggt 10507396  T

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Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 349 - 400
Target Start/End: Original strand, 10860707 - 10860758
Alignment:
Q  349 acccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 400  Q
    |||||||||||| |||||||||||||||||||||||  ||||||||| ||||    
T  10860707 acccatgaatactggtataaatttccgtgctatggtgaccctacgaactgct 10860758  T

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Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 400
Target Start/End: Original strand, 10474161 - 10474223
Alignment:
Q  338 ttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 400  Q
    |||| |||||| ||||||||||  |||||||| |||||||||||||| |||||||||| ||||    
T  10474161 ttgaaagcactgcccatgaatattggtataaacttccgtgctatggtggccctacgaactgct 10474223  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 400
Target Start/End: Complemental strand, 7476622 - 7476566
Alignment:
Q  344 gcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 400  Q
    |||||||||||||| ||||||| ||||||| ||||||| || |||||| ||||||||    
T  7476622 gcactacccatgaaaaccggtacaaatttctgtgctatagttgccctatgaattgct 7476566  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 400
Target Start/End: Original strand, 10848803 - 10848854
Alignment:
Q  349 acccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 400  Q
    |||||||||||| |||||||||||  |||||||||| |||||||||| ||||    
T  10848803 acccatgaatactggtataaatttgtgtgctatggtggccctacgaactgct 10848854  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 252 - 314
Target Start/End: Complemental strand, 9081413 - 9081351
Alignment:
Q  252 attggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatcca 314  Q
    ||||||| || |||||||||||  ||||||| ||||| ||||||||| ||| |||||||||||    
T  9081413 attggtcgagcgcataattacttgcttcaattggacacggcaaataattaagtacaccatcca 9081351  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 400
Target Start/End: Complemental strand, 7478788 - 7478731
Alignment:
Q  343 agcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 400  Q
    |||||| |||||||| |||||||||||||| |||||| |||| |||||| ||| ||||    
T  7478788 agcactgcccatgaagaccggtataaatttgcgtgctctggttgccctaagaactgct 7478731  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 260 - 324
Target Start/End: Original strand, 10505487 - 10505551
Alignment:
Q  260 agagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttg 324  Q
    ||||||||||||||| ||||| | ||||| ||||||||| |||  |||||||||| |||| ||||    
T  10505487 agagcataattactagcttcagttggacacggcaaataattaagcacaccatccaaaagtagttg 10505551  T

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Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 490 - 563
Target Start/End: Complemental strand, 34240071 - 34239998
Alignment:
Q  490 ttcactgtcaaagctcttaagatatcaacttcaacaaccagaagacgtaggttgagttgctcagcctcggcttc 563  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34240071 ttcactgtcaaagctcttaagatatcaacttcaacaaccagaagacgtaggttgagttgctcagcctcggcttc 34239998  T

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Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 233 - 331
Target Start/End: Original strand, 15044800 - 15044898
Alignment:
Q  233 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 331  Q
    ||||||||||| || || ||||||||||| ||||||||| |||||||||| ||||| ||||||||| ||| ||||||||||||||||||||||| ||||    
T  15044800 accttctcctccttattagattggtcaagggcataattattaacttcaattggacatggcaaataactaagtacaccatccagaagtggttgtatcccc 15044898  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 146 - 236
Target Start/End: Original strand, 15043971 - 15044061
Alignment:
Q  146 cttagatatgttaactgaccaaacttcctttgctccaacttgaaagccaatgctacaaggggcccatcgggacttccagtcagctgaacct 236  Q
    |||| |||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||| | |||| ||||| |||||    
T  15043971 cttaaatatgttagctgaccaaacttactttcctccaacttgaaagccaatgctacaaggggcccatcaggattaccaggcagctcaacct 15044061  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 333 - 404
Target Start/End: Original strand, 15045570 - 15045641
Alignment:
Q  333 tgtttttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgctccct 404  Q
    ||||||||| ||||||||||||||||||||||||||||||||| || | ||||||||||||||| |||||||    
T  15045570 tgtttttgaaagcactacccatgaataccggtataaatttccgcgccacggtagccctacgaatggctccct 15045641  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 86 - 148
Target Start/End: Original strand, 15043792 - 15043854
Alignment:
Q  86 ttctttccagtgctaacattaacaataaaatcacccttccgaatgacgccctcataaactctt 148  Q
    ||||| |||||| ||||||||| ||| ||||||||||||||||||||||||||||||| ||||    
T  15043792 ttcttgccagtgttaacattaataatgaaatcacccttccgaatgacgccctcataaattctt 15043854  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 431 - 484
Target Start/End: Original strand, 15047553 - 15047606
Alignment:
Q  431 tcatcgctaagaaacgcttcagcaagtacatcatctacctctgacacaggttct 484  Q
    ||||| |||||||||||||| ||||||| |||||| ||||||||||||| ||||    
T  15047553 tcatcactaagaaacgcttccgcaagtatatcatcaacctctgacacagtttct 15047606  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 399
Target Start/End: Original strand, 44307022 - 44307073
Alignment:
Q  348 tacccatgaataccggtataaatttccgtgctatggtagccctacgaattgc 399  Q
    |||||||||| |  |||| |||||||||||||||||| ||||||||||||||    
T  44307022 tacccatgaaaattggtacaaatttccgtgctatggttgccctacgaattgc 44307073  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 331
Target Start/End: Original strand, 33601026 - 33601124
Alignment:
Q  233 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 331  Q
    ||||| ||||||||||| ||||||   |||||||||||| |  ||||| | ||||| ||||||| | |||  |||||||||| ||||||||||| ||||    
T  33601026 accttttcctcattcttagattggatgagagcataattagttgcttcagttggacacggcaaattattaagcacaccatccaaaagtggttgtagcccc 33601124  T

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