View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5176_low_50 (Length: 248)
Name: NF5176_low_50
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5176_low_50 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 50388476 - 50388688
Alignment:
| Q |
1 |
ccattgtccccatataacttagtctaaaaattagaatcaaatccatctgttggtacacaagcaaatgtaaataggaggaaaacttcattttcgttcagac |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50388476 |
ccattgtccccatatatcttagtctaaaaattagaatcaaatccatctgttggtacacaagcaaatgtaaataggaggaaaacttcattttcgttcagac |
50388575 |
T |
|
| Q |
101 |
aaatataaaggatcagttgtttagatactctacaaaaaattcatatttacgtacgatcaaatatttgttttgatactttgtaaatggaaattgatcattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50388576 |
aaatataaaggatcagttgtttagatactctacaaaaaattcatatttacgtacgatcaaatatttgttttgatactttgtaaatggaaattgatcattt |
50388675 |
T |
|
| Q |
201 |
ttaaaatgaaatt |
213 |
Q |
| |
|
||||||||||||| |
|
|
| T |
50388676 |
ttaaaatgaaatt |
50388688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 50383310 - 50383350
Alignment:
| Q |
2 |
cattgtccccatataacttagtctaaaaattagaatcaaat |
42 |
Q |
| |
|
||||| ||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
50383310 |
cattgaccccagatatcttagtctaaaaattagaatcaaat |
50383350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University