View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5176_low_53 (Length: 244)
Name: NF5176_low_53
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5176_low_53 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 26367991 - 26367771
Alignment:
| Q |
16 |
gctatgactggaatgtcaatattcaaaacaattggtccagctggaggtggtgcagtgtgagtgtaccattgaattatctgaaatatgagaattatatatt |
115 |
Q |
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| T |
26367991 |
gctatgactggaatgtcaatattcaaaacaattggtccagctggaggtggtgcagtgtgagtgtaccattgatttatctgaaatatgagaattatatatt |
26367892 |
T |
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| Q |
116 |
tatatgctctgataccatcttaaatgttgtgactaactcatgccttggtaaaatacagtgcatgcttggcatatatat-aattcattttcgactacaaca |
214 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
26367891 |
tatatgctctcataccatcttaaatgttgtgactaactcatgccttggtaaaatacagtgcatgcttggcatatatataaattcattttcgactacaaca |
26367792 |
T |
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| Q |
215 |
atatattgaaaacagtataat |
235 |
Q |
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||||||||||||||||||||| |
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| T |
26367791 |
atatattgaaaacagtataat |
26367771 |
T |
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Back To:
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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 2609571 - 2609633
Alignment:
| Q |
16 |
gctatgactggaatgtcaatattcaaaacaattggtccagctggaggtggtgcagtgtgagtg |
78 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2609571 |
gctatgactggaatgtcaatattcaaaacaattggtccagctggaggtggtgcagtgtgagtg |
2609633 |
T |
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