View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5176_low_54 (Length: 244)
Name: NF5176_low_54
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5176_low_54 |
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Alignment Details
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 144 - 203
Target Start/End: Complemental strand, 14135081 - 14135022
Alignment:
| Q |
144 |
agaaggagttagttggcaagccaacttatgaatatatgtttgattaagaattttcaaatt |
203 |
Q |
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| T |
14135081 |
agaaggagttagttggcaagccaacttatgaatatatgtttgattaagaattttcaaatt |
14135022 |
T |
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Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 189 - 240
Target Start/End: Complemental strand, 14135004 - 14134953
Alignment:
| Q |
189 |
aagaattttcaaattacgaaaaccaagaccaccctcttcctttgggtttcat |
240 |
Q |
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| T |
14135004 |
aagaattttcaaattacgaaaaccaagaccaccctctccctttgggtttcat |
14134953 |
T |
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