View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5176_low_58 (Length: 241)
Name: NF5176_low_58
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5176_low_58 |
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| [»] scaffold0219 (1 HSPs) |
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Alignment Details
Target: scaffold0219 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: scaffold0219
Description:
Target: scaffold0219; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 9071 - 9295
Alignment:
| Q |
1 |
tcatcatgttaaatcccctcaaaattaaacattgcaccatacttgcactaaaaatcttaagaactcatagctagaatcatgggaactagtcttgtactta |
100 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
9071 |
tcatcatgataaatcccctcaaaattaaacattgcaccatacttgcactaaaaatcttaagaactcatagctagaatcatgggaactagccttgtactta |
9170 |
T |
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| Q |
101 |
tgtataacaaagtcatgattcatctttggtttattgtatgtatatgcataaattcatgctattctcaacaaccttacgacagttctaattgttattcaaa |
200 |
Q |
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| T |
9171 |
tgtataacaaagtcatgattcatctttggtttattgtatgtatatgcataaattcatgctattctcaacaaccttacgacagttctaattgttattcaaa |
9270 |
T |
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| Q |
201 |
tgaaacatcaccaggtacaaggtac |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
9271 |
tgaaacatcaccaggtacaaggtac |
9295 |
T |
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Target: chr4 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 55 - 225
Target Start/End: Complemental strand, 21541990 - 21541817
Alignment:
| Q |
55 |
tcttaagaactcatagctagaatcatgggaactagtcttgtacttatgtataacaa---agtcatgattcatctttggtttattgtatgtatatgcataa |
151 |
Q |
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| T |
21541990 |
tcttaagaactcatagctagaatcatgggaactaatcttgtacttatgtataacaacaaagtcatgattcatctttggtttatcatatgtatatgcataa |
21541891 |
T |
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| Q |
152 |
attcatgctattctcaacaaccttacgacagttctaattgttattcaaatgaaacatcaccaggtacaaggtac |
225 |
Q |
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| T |
21541890 |
attcatgctattctcaacaaccttacgacagttctaattgttattcaaatgaaacatcaccaggttcaaggtac |
21541817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 8784068 - 8784115
Alignment:
| Q |
4 |
tcatgttaaatcccctcaaaattaaacattgcaccatacttgcactaa |
51 |
Q |
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| T |
8784068 |
tcatgttgaatcccctcaaatgtaaacattgcaccacacttgcactaa |
8784115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 46615609 - 46615654
Alignment:
| Q |
3 |
atcatgttaaatcccctcaaaattaaacattgcaccatacttgcac |
48 |
Q |
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| T |
46615609 |
atcatgttgaatcccctcaaatataaacattgcaccacacttgcac |
46615654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 19926219 - 19926263
Alignment:
| Q |
4 |
tcatgttaaatcccctcaaaattaaacattgcaccatacttgcac |
48 |
Q |
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| T |
19926219 |
tcatgttgaatcccctcaaatataaacattgcaccacacttgcac |
19926263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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