View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5176_low_6 (Length: 576)
Name: NF5176_low_6
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5176_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 21 - 430
Target Start/End: Original strand, 21484194 - 21484600
Alignment:
| Q |
21 |
tgttgctcttgtgtgaaatccactaaagggttttcatcttcattttgaaaaatcgaagcagggtcaaaaaattcattagcttctaaaagctccatgtaac |
120 |
Q |
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| T |
21484194 |
tgttgctcttgagtgaaatccactaaagggttttcatcttcattttgaaaaatcgaagcagggtcaaaaaattcattagcttctaaaagctccatgtaac |
21484293 |
T |
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| Q |
121 |
caaaagtatccataatgttaacatcatccatgcaatcaccaccaccaacaacaacatcattgttagaaacaccaagatcttgttgctgttgctgagaaat |
220 |
Q |
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| T |
21484294 |
caaaagtatccataatgttaacatcatccatgcaatcaccaccaccaacaacaacatcattgttagaaacaccaagatcttgttgctgttgttgagaaat |
21484393 |
T |
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| Q |
221 |
ctccatagaagcagttgatgacaaagttgttggaggatgaccatgatgataatctaatggatgaccatgtttttgatgataaccttgatgatctacttca |
320 |
Q |
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| T |
21484394 |
ctccatagaagcagttgatgacaaagttgttggaggatgaccatgatgataatctaatggatgaccatgtttt---tgataaccttgatgatctacttca |
21484490 |
T |
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| Q |
321 |
acatctgatttcaaaacagcccaagaagctgcagatgaagaagaagctgaggaagaagaagaggtagtagttgttgtagttgaagtacatgcaatggttt |
420 |
Q |
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| T |
21484491 |
acatctgatttcaaaacagcccaagaagctgcagatgaagaagaagctgaggaagaagaagaggtagtagttgttgtagttgaagtacatgcaatggttt |
21484590 |
T |
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| Q |
421 |
tcaatggtgt |
430 |
Q |
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| T |
21484591 |
tcaatggtgt |
21484600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 461 - 567
Target Start/End: Original strand, 21484631 - 21484737
Alignment:
| Q |
461 |
catgcatggaaaatcaggtaaaggtggaaaatcagcatagaacatagatgcatcatcattcatattcatacctaaaagatcaccatcttgatcatttgta |
560 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21484631 |
catgcatggaaaatcaggtaaaggaggaaaatcagcatagaacatagatgcatcatcattcatattcatacctaaaagatcaccatcttgatcatttgta |
21484730 |
T |
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| Q |
561 |
gtattat |
567 |
Q |
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||||||| |
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| T |
21484731 |
gtattat |
21484737 |
T |
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