View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5176_low_61 (Length: 239)
Name: NF5176_low_61
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5176_low_61 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 4258606 - 4258827
Alignment:
| Q |
17 |
cctttaaagttactcaaagatttgccaaaagttgctgcgtcttgcaattgtgtgcgttgcatatgatggagaaatgttgcacttccaagttgggtttaag |
116 |
Q |
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| T |
4258606 |
cctttaaagttactcaaagatttgccaaac-ttgctgcgtcttgcaattgtgtgcgatgcatatgatggagaaatgttgcacttccaagttgggtttaag |
4258704 |
T |
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| Q |
117 |
aagttgaacaaactatatcttgtgcagttgaataacttgaattccattttaatagacaatggaactttacctgcccttaaactaattgaaatggtgtcta |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4258705 |
aagttgaacaaactatatcttgtgcagttgaataacttgaattccattttaatagacaacggaactttacctgcccttaaactaattgaaatggtgtcta |
4258804 |
T |
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| Q |
217 |
ttcccaaactaagtgagattccc |
239 |
Q |
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| T |
4258805 |
ttcccaaactaagtgagattccc |
4258827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 4262228 - 4262449
Alignment:
| Q |
17 |
cctttaaagttactcaaagatttgccaaaagttgctgcgtcttgcaattgtgtgcgttgcatatgatggagaaatgttgcacttccaagttgggtttaag |
116 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4262228 |
cctttaaagttactcaaagatttgccaaac-ttgctgcgtcttgcaattgtgtgcgatgcatatgatggagaaatgttgcacttccaagttgggtttaag |
4262326 |
T |
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| Q |
117 |
aagttgaacaaactatatcttgtgcagttgaataacttgaattccattttaatagacaatggaactttacctgcccttaaactaattgaaatggtgtcta |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4262327 |
aagttgaacaaactatatcttgtgcagttgaataacttgaattccattttaatagacaacggaactttacctgcccttaaactaattgaaatggtgtcta |
4262426 |
T |
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| Q |
217 |
ttcccaaactaagtgagattccc |
239 |
Q |
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| T |
4262427 |
ttcccaaactaagtgagattccc |
4262449 |
T |
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