View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5176_low_65 (Length: 239)

Name: NF5176_low_65
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5176_low_65
NF5176_low_65
[»] scaffold0294 (1 HSPs)
scaffold0294 (1-227)||(8819-9045)
[»] chr6 (26 HSPs)
chr6 (1-227)||(5096644-5096870)
chr6 (6-227)||(5383267-5383488)
chr6 (1-227)||(5066613-5066839)
chr6 (10-226)||(5690079-5690295)
chr6 (23-226)||(5176697-5176900)
chr6 (8-227)||(5350337-5350556)
chr6 (8-227)||(5073827-5074046)
chr6 (23-226)||(5278524-5278727)
chr6 (6-227)||(5128336-5128557)
chr6 (8-227)||(5425853-5426072)
chr6 (1-227)||(5157547-5157773)
chr6 (6-227)||(5344802-5345023)
chr6 (1-192)||(5102568-5102759)
chr6 (1-227)||(5370507-5370733)
chr6 (15-227)||(5354533-5354745)
chr6 (8-227)||(5181846-5182065)
chr6 (15-204)||(5447537-5447726)
chr6 (20-204)||(5284331-5284515)
chr6 (15-221)||(5433985-5434191)
chr6 (15-156)||(5257324-5257465)
chr6 (20-168)||(5447112-5447260)
chr6 (45-227)||(5281280-5281462)
chr6 (8-225)||(5396893-5397110)
chr6 (45-227)||(5179521-5179703)
chr6 (1-103)||(5243910-5244012)
chr6 (145-227)||(5243832-5243914)
[»] chr5 (1 HSPs)
chr5 (1-227)||(8877545-8877771)
[»] chr4 (14 HSPs)
chr4 (1-227)||(4344582-4344808)
chr4 (1-227)||(4361013-4361239)
chr4 (32-227)||(4123858-4124053)
chr4 (1-227)||(4320538-4320764)
chr4 (1-227)||(4335281-4335507)
chr4 (1-196)||(4133375-4133568)
chr4 (41-196)||(7885341-7885496)
chr4 (137-227)||(6728478-6728568)
chr4 (137-227)||(6753032-6753122)
chr4 (151-227)||(6822777-6822853)
chr4 (137-227)||(6545367-6545457)
chr4 (137-227)||(6588115-6588205)
chr4 (137-198)||(6498474-6498535)
chr4 (89-193)||(6761316-6761420)
[»] chr7 (2 HSPs)
chr7 (23-227)||(36213748-36213952)
chr7 (82-195)||(18935403-18935516)
[»] chr2 (1 HSPs)
chr2 (82-214)||(22584146-22584278)
[»] chr3 (4 HSPs)
chr3 (35-175)||(47986823-47986963)
chr3 (35-175)||(47996110-47996250)
chr3 (35-175)||(48005397-48005537)
chr3 (35-175)||(48014682-48014822)


Alignment Details
Target: scaffold0294 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 9045 - 8819
Alignment:
Q  1 ccttcgtagccttacaaggagcatctataatttgaaatgtctgaaaactctcattctttccgggtgtataatgattggcgtgttggaagaggacatagaa 100  Q
    ||||||||||||| |||| ||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||| |  |||||||||||||||||||    
T  9045 ccttcgtagccttccaagaagcatctataagttgaaatctctgaaaactctcattctttctgggtgtataatgattgacaagttggaagaggacatagaa 8946  T
Q  101 caaatggaatctttaaccactctgcttgcaagtaacactgcaataacaagagtgcccttgtcaatagtaaggtcaaaaagtattgtatatatttctttgt 200  Q
    || |||||||||||||||||||||||||||  |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8945 cagatggaatctttaaccactctgcttgcagataacactgcattaacaagagtgcccttttcaatagtaaggtcaaaaagtattgtatatatttctttgt 8846  T
Q  201 gcggccgtgaaggattctcacgtgatg 227  Q
    |||||| ||||||||||||||||||||    
T  8845 gcggccatgaaggattctcacgtgatg 8819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 131; Significance: 4e-68; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 5096644 - 5096870
Alignment:
Q  1 ccttcgtagccttacaaggagcatctataatttgaaatgtctgaaaactctcattctttccgggtgtataatgattggcgtgttggaagaggacatagaa 100  Q
    ||||||||||||| || | ||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||    
T  5096644 ccttcgtagccttccaggaagcatctataagttgaaatctctgaaaactctcattctttctgggtgtataatgattgacgagttggaagaggacatagaa 5096743  T
Q  101 caaatggaatctttaaccactctgcttgcaagtaacactgcaataacaagagtgcccttgtcaatagtaaggtcaaaaagtattgtatatatttctttgt 200  Q
    ||||||||||| ||||||| ||||||||||| |||||||| ||||| |||||| ||||| ||| |||||||||||||||| |||| ||| |||||| | |    
T  5096744 caaatggaatcattaaccattctgcttgcaaataacactggaataaaaagagtacccttttcagtagtaaggtcaaaaagcattggatacatttctctat 5096843  T
Q  201 gcggccgtgaaggattctcacgtgatg 227  Q
    | |||| ||||||||| ||||||||||    
T  5096844 gtggccatgaaggattttcacgtgatg 5096870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 6 - 227
Target Start/End: Original strand, 5383267 - 5383488
Alignment:
Q  6 gtagccttacaaggagcatctataatttgaaatgtctgaaaactctcattctttccgggtgtataatgattggcgtgttggaagaggacatagaacaaat 105  Q
    |||||||  |||| ||||| ||||| ||||||| ||||||||||||||||||||| || ||| ||| ||||  |  ||||||||||||||||||||||||    
T  5383267 gtagcctcccaagaagcatttataagttgaaatctctgaaaactctcattctttctggttgtttaaagattaccaagttggaagaggacatagaacaaat 5383366  T
Q  106 ggaatctttaaccactctgcttgcaagtaacactgcaataacaagagtgcccttgtcaatagtaaggtcaaaaagtattgtatatatttctttgtgcggc 205  Q
    |||||||||||| ||| ||||||||  ||||||||||||||||||||| ||| | |||||  ||||||||||||||||||||||||||||||||||||||    
T  5383367 ggaatctttaactactttgcttgcagataacactgcaataacaagagttcccctttcaattttaaggtcaaaaagtattgtatatatttctttgtgcggc 5383466  T
Q  206 cgtgaaggattctcacgtgatg 227  Q
    | ||||||||||||||||||||    
T  5383467 catgaaggattctcacgtgatg 5383488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 5066839 - 5066613
Alignment:
Q  1 ccttcgtagccttacaaggagcatctataatttgaaatgtctgaaaactctcattctttccgggtgtataatgattggcgtgttggaagaggacatagaa 100  Q
    |||||||| |||| |||| ||||||||||| ||||||| ||| ||||||||||||||||| |||||||||||||||| |  ||| |||||||||||||||    
T  5066839 ccttcgtaaccttccaagaagcatctataagttgaaatctcttaaaactctcattctttctgggtgtataatgattgacaagttagaagaggacatagaa 5066740  T
Q  101 caaatggaatctttaaccactctgcttgcaagtaacactgcaataacaagagtgcccttgtcaatagtaaggtcaaaaagtattgtatatatttctttgt 200  Q
    ||||||||||||||||||||||||||||||  ||| |||||||||| |||| | ||||| ||| |||||||||||||||| |||| ||| || |||||||    
T  5066739 caaatggaatctttaaccactctgcttgcacataaaactgcaataaaaagaatacccttttcagtagtaaggtcaaaaagcattggatacatctctttgt 5066640  T
Q  201 gcggccgtgaaggattctcacgtgatg 227  Q
    |||||  |||||||||||| |||||||    
T  5066639 gcggctatgaaggattctcgcgtgatg 5066613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 10 - 226
Target Start/End: Complemental strand, 5690295 - 5690079
Alignment:
Q  10 ccttacaaggagcatctataatttgaaatgtctgaaaactctcattctttccgggtgtataatgattggcgtgttggaagaggacatagaacaaatggaa 109  Q
    |||| |||| ||||||||||| ||||||| ||||||||||||||||||||||||||||  |||||||  |  ||||||||||||| | ||||||||||||    
T  5690295 ccttccaagaagcatctataagttgaaatctctgaaaactctcattctttccgggtgttcaatgattaacaagttggaagaggacttggaacaaatggaa 5690196  T
Q  110 tctttaaccactctgcttgcaagtaacactgcaataacaagagtgcccttgtcaatagtaaggtcaaaaagtattgtatatatttctttgtgcggccgtg 209  Q
    |||||||||||||||||||||| | |||||| ||||||||| |||||||| ||||| |||||||||||||| ||||  ||||||||| ||||||| | ||    
T  5690195 tctttaaccactctgcttgcaaatgacactggaataacaagtgtgcccttttcaattgtaaggtcaaaaagcattgggtatatttctctgtgcggacatg 5690096  T
Q  210 aaggattctcacgtgat 226  Q
    |||||||||||||||||    
T  5690095 aaggattctcacgtgat 5690079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 23 - 226
Target Start/End: Original strand, 5176697 - 5176900
Alignment:
Q  23 atctataatttgaaatgtctgaaaactctcattctttccgggtgtataatgattggcgtgttggaagaggacatagaacaaatggaatctttaaccactc 122  Q
    |||||||| ||||||| | ||||||| ||||||||||| ||||||   ||||||| |  ||||||||||||| | |||||||||||||||||||| ||||    
T  5176697 atctataagttgaaatctttgaaaacactcattctttctgggtgttcgatgattgacaagttggaagaggacttggaacaaatggaatctttaactactc 5176796  T
Q  123 tgcttgcaagtaacactgcaataacaagagtgcccttgtcaatagtaaggtcaaaaagtattgtatatatttctttgtgcggccgtgaaggattctcacg 222  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| || ||||||||||||  |||||||||||||||    
T  5176797 tgcttgcaaataacactgcaataacaagagtgcccttgtcaatagtaaggtcaaaaagcattggatacatctctttgtgcggctatgaaggattctcacg 5176896  T
Q  223 tgat 226  Q
    ||||    
T  5176897 tgat 5176900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 8 - 227
Target Start/End: Original strand, 5350337 - 5350556
Alignment:
Q  8 agccttacaaggagcatctataatttgaaatgtctgaaaactctcattctttccgggtgtataatgattggcgtgttggaagaggacatagaacaaatgg 107  Q
    |||||| |||| ||||||| ||| ||||||| ||| ||||||||||||||||| |||||||||||||||| |  ||||||||||||||||||||||||||    
T  5350337 agccttccaagaagcatctttaagttgaaatctctcaaaactctcattctttcagggtgtataatgattgacaagttggaagaggacatagaacaaatgg 5350436  T
Q  108 aatctttaaccactctgcttgcaagtaacactgcaataacaagagtgcccttgtcaatagtaaggtcaaaaagtattgtatatatttctttgtgcggccg 207  Q
    |||||||||||||||||||||||  ||| |||||||||| |||| | ||||| ||| |||||||||||||||| |||| ||| || ||||||||||||      
T  5350437 aatctttaaccactctgcttgcacataaaactgcaataaaaagaatacccttttcagtagtaaggtcaaaaagcattggatacatctctttgtgcggcta 5350536  T
Q  208 tgaaggattctcacgtgatg 227  Q
    ||||||||| ||||||||||    
T  5350537 tgaaggattttcacgtgatg 5350556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 8 - 227
Target Start/End: Complemental strand, 5074046 - 5073827
Alignment:
Q  8 agccttacaaggagcatctataatttgaaatgtctgaaaactctcattctttccgggtgtataatgattggcgtgttggaagaggacatagaacaaatgg 107  Q
    |||||| |||| || |||||||| ||||||| ||| ||||||||||||||||||||||||  |||||||| |  ||||||||||||| ||||||| |||     
T  5074046 agccttccaagaagtatctataagttgaaatctctaaaaactctcattctttccgggtgttcaatgattgacaagttggaagaggacttagaacagatga 5073947  T
Q  108 aatctttaaccactctgcttgcaagtaacactgcaataacaagagtgcccttgtcaatagtaaggtcaaaaagtattgtatatatttctttgtgcggccg 207  Q
     |||||||||||||||| | |||| |||||| |||||||||||||||||||| ||| |||||||||| ||||| |||| |||||||||||||||||||      
T  5073946 catctttaaccactctgatagcaaataacaccgcaataacaagagtgcccttttcagtagtaaggtcgaaaagcattggatatatttctttgtgcggcta 5073847  T
Q  208 tgaaggattctcacgtgatg 227  Q
    ||||||||||||||||||||    
T  5073846 tgaaggattctcacgtgatg 5073827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 23 - 226
Target Start/End: Original strand, 5278524 - 5278727
Alignment:
Q  23 atctataatttgaaatgtctgaaaactctcattctttccgggtgtataatgattggcgtgttggaagaggacatagaacaaatggaatctttaaccactc 122  Q
    |||||||| ||||||| | ||||||| ||||||||||| ||||||   ||||||| |  ||||||||||||| | |||||||||||||||||||| ||||    
T  5278524 atctataagttgaaatctttgaaaacactcattctttctgggtgttcgatgattgacaagttggaagaggacttggaacaaatggaatctttaactactc 5278623  T
Q  123 tgcttgcaagtaacactgcaataacaagagtgcccttgtcaatagtaaggtcaaaaagtattgtatatatttctttgtgcggccgtgaaggattctcacg 222  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||| || ||||||||||||  |||||||||||||||    
T  5278624 tgcttgcaaataacactgcaataacaagagtgcccttgtctatagtaaggtcaaaaagcattggatacatctctttgtgcggctatgaaggattctcacg 5278723  T
Q  223 tgat 226  Q
    ||||    
T  5278724 tgat 5278727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 6 - 227
Target Start/End: Complemental strand, 5128557 - 5128336
Alignment:
Q  6 gtagccttacaaggagcatctataatttgaaatgtctgaaaactctcattctttccgggtgtataatgattggcgtgttggaagaggacatagaacaaat 105  Q
    |||||||  |||| ||||||||||| ||||||| | ||||||||||||||||||| || ||||||||||||| |  ||||||||||||| | ||||||||    
T  5128557 gtagcctcccaagaagcatctataagttgaaatctttgaaaactctcattctttctggttgtataatgattgacaagttggaagaggacttggaacaaat 5128458  T
Q  106 ggaatctttaaccactctgcttgcaagtaacactgcaataacaagagtgcccttgtcaatagtaaggtcaaaaagtattgtatatatttctttgtgcggc 205  Q
    |||||| ||||| ||||||||||||| |||||||||||||| |||||| ||||| ||| |||||||||||||||| |||| |||||| ||| ||||||||    
T  5128457 ggaatcattaacaactctgcttgcaaataacactgcaataaaaagagtacccttttcagtagtaaggtcaaaaagcattggatatatctctctgtgcggc 5128358  T
Q  206 cgtgaaggattctcacgtgatg 227  Q
    | ||||||||| ||| ||||||    
T  5128357 catgaaggattttcaagtgatg 5128336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 8 - 227
Target Start/End: Original strand, 5425853 - 5426072
Alignment:
Q  8 agccttacaaggagcatctataatttgaaatgtctgaaaactctcattctttccgggtgtataatgattggcgtgttggaagaggacatagaacaaatgg 107  Q
    |||||| |||| | ||||||||| ||||||| ||||||||||||||||||||| |||||| ||||||||| |  ||||||||||||||||||||||||||    
T  5425853 agccttccaagaaacatctataagttgaaatctctgaaaactctcattctttctgggtgtgtaatgattgacaagttggaagaggacatagaacaaatgg 5425952  T
Q  108 aatctttaaccactctgcttgcaagtaacactgcaataacaagagtgcccttgtcaatagtaaggtcaaaaagtattgtatatatttctttgtgcggccg 207  Q
    ||||||||||||||||| |||||  ||| |||||||||| |||||| ||||| ||| | |||| |||| |||| |||| ||| || ||||||||||||      
T  5425953 aatctttaaccactctgattgcacataaaactgcaataaaaagagtacccttttcagtggtaatgtcacaaagcattggatacatctctttgtgcggcta 5426052  T
Q  208 tgaaggattctcacgtgatg 227  Q
    ||||||||| ||||||||||    
T  5426053 tgaaggattttcacgtgatg 5426072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 5157773 - 5157547
Alignment:
Q  1 ccttcgtagccttacaaggagcatctataatttgaaatgtctgaaaactctcattctttccgggtgtataatgattggcgtgttggaagaggacatagaa 100  Q
    |||||| |||||| |||| ||||||||||| ||||||| |||||||| | | |||||||| |||||||||||||||| |  |||||||||||||||||||    
T  5157773 ccttcgaagccttccaagaagcatctataagttgaaatctctgaaaattttaattctttcagggtgtataatgattgacaagttggaagaggacatagaa 5157674  T
Q  101 caaatggaatctttaaccactctgcttgcaagtaacactgcaataacaagagtgcccttgtcaatagtaaggtcaaaaagtattgtatatatttctttgt 200  Q
    || |||||||||||||||||||||||||||    |||||||||||| |||||| ||||| ||| |||||||||||||||| |||| ||| || ||||||     
T  5157673 cagatggaatctttaaccactctgcttgcacacgacactgcaataaaaagagtacccttttcagtagtaaggtcaaaaagcattggatacatctctttgg 5157574  T
Q  201 gcggccgtgaaggattctcacgtgatg 227  Q
    |||||  ||||||||| || |||||||    
T  5157573 gcggctatgaaggattttctcgtgatg 5157547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 6 - 227
Target Start/End: Original strand, 5344802 - 5345023
Alignment:
Q  6 gtagccttacaaggagcatctataatttgaaatgtctgaaaactctcattctttccgggtgtataatgattggcgtgttggaagaggacatagaacaaat 105  Q
    |||||||  |||| ||||||||||| ||||| | ||| ||||||||||||||||| || ||| ||| ||||| |  ||||||||||||| ||||||||||    
T  5344802 gtagcctgccaagaagcatctataagttgaattctctaaaaactctcattctttcgggttgtttaaagattgacaagttggaagaggacttagaacaaat 5344901  T
Q  106 ggaatctttaaccactctgcttgcaagtaacactgcaataacaagagtgcccttgtcaatagtaaggtcaaaaagtattgtatatatttctttgtgcggc 205  Q
    | |||||||||||| |||| | |||| ||||||||||||||||| ||| ||||| | | |||||||||||||||| |||| |||||||||| |||| |||    
T  5344902 gaaatctttaaccattctgatcgcaaataacactgcaataacaaaagttccctttttagtagtaaggtcaaaaagcattggatatatttctctgtgtggc 5345001  T
Q  206 cgtgaaggattctcacgtgatg 227  Q
      ||||||||||||||| ||||    
T  5345002 tatgaaggattctcacgcgatg 5345023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 5102759 - 5102568
Alignment:
Q  1 ccttcgtagccttacaaggagcatctataatttgaaatgtctgaaaactctcattctttccgggtgtataatgattggcgtgttggaagaggacatagaa 100  Q
    ||||||||||||| |||| ||||||||||| ||||||| | ||||||  ||||||||||| |||||| ||||||||| |  ||||||||| ||| | |||    
T  5102759 ccttcgtagccttccaagaagcatctataagttgaaatctttgaaaatactcattctttctgggtgtttaatgattgacaagttggaagacgacttggaa 5102660  T
Q  101 caaatggaatctttaaccactctgcttgcaagtaacactgcaataacaagagtgcccttgtcaatagtaaggtcaaaaagtattgtatatat 192  Q
    ||||||||||| ||||||||||| || ||||  |||||||||||||||| ||||||||| ||| |||||||||||||||| |||| ||||||    
T  5102659 caaatggaatcattaaccactcttctagcaaacaacactgcaataacaacagtgcccttttcagtagtaaggtcaaaaagcattggatatat 5102568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 5370507 - 5370733
Alignment:
Q  1 ccttcgtagccttacaaggagcatctataatttgaaatgtctgaaaactctcattctttccgggtgtataatgattggcgtgttggaagaggacatagaa 100  Q
    |||||||| |||| |||| ||||| ||||| ||||||| ||| || ||||| |||||||| |||||| |||||||||    |||||||||||| ||||||    
T  5370507 ccttcgtaaccttccaagaagcatttataagttgaaatctctaaagactcttattctttcagggtgtgtaatgattgagaagttggaagaggatatagaa 5370606  T
Q  101 caaatggaatctttaaccactctgcttgcaagtaacactgcaataacaagagtgcccttgtcaatagtaaggtcaaaaagtattgtatatatttctttgt 200  Q
    || |||||||| ||||||||||||||||||| |||||||||||||| ||| || ||||| ||| ||||| |||||||||| |||| ||| ||||| ||||    
T  5370607 cagatggaatcattaaccactctgcttgcaaataacactgcaataaaaagggtacccttttcagtagtacggtcaaaaagcattggatacatttcattgt 5370706  T
Q  201 gcggccgtgaaggattctcacgtgatg 227  Q
    | |||| || |||||| |||| |||||    
T  5370707 gtggccatgtaggattttcacatgatg 5370733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 15 - 227
Target Start/End: Complemental strand, 5354745 - 5354533
Alignment:
Q  15 caaggagcatctataatttgaaatgtctgaaaactctcattctttccgggtgtataatgattggcgtgttggaagaggacatagaacaaatggaatcttt 114  Q
    |||| |||||||| || ||||||| | ||||||||||||||||||| || |||| || | | | |  ||||||||||||| | |||||| ||||||||||    
T  5354745 caagaagcatctacaagttgaaatctttgaaaactctcattctttctggttgtaaaaagttagacaagttggaagaggacttggaacaattggaatcttt 5354646  T
Q  115 aaccactctgcttgcaagtaacactgcaataacaagagtgcccttgtcaatagtaaggtcaaaaagtattgtatatatttctttgtgcggccgtgaagga 214  Q
    |||||| |||||||||| | ||||||||||||||||||| ||||| |||||||| || || ||||| |||| |||||||||||| || |||  |||||||    
T  5354645 aaccaccctgcttgcaaatgacactgcaataacaagagtacccttctcaatagttagttccaaaagcattggatatatttctttatgtggctatgaagga 5354546  T
Q  215 ttctcacgtgatg 227  Q
    |||||||||||||    
T  5354545 ttctcacgtgatg 5354533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 8 - 227
Target Start/End: Complemental strand, 5182065 - 5181846
Alignment:
Q  8 agccttacaaggagcatctataatttgaaatgtctgaaaactctcattctttccgggtgtataatgattggcgtgttggaagaggacatagaacaaatgg 107  Q
    |||||| |||| |||||||||||||||||||   | || |||||||||||||| |||||| ||||||||| |  ||||||||||||  | |||||||||     
T  5182065 agccttccaagaagcatctataatttgaaatcattaaacactctcattctttctgggtgtttaatgattgacaagttggaagaggatttggaacaaatga 5181966  T
Q  108 aatctttaaccactctgcttgcaagtaacactgcaataacaagagtgcccttgtcaatagtaaggtcaaaaagtattgtatatatttctttgtgcggccg 207  Q
    |||||||||||||  || |||||| |||||||||||||||||||||||| || ||| |||||| ||| ||||| |||| ||||||||| ||||| ||       
T  5181965 aatctttaaccacattgattgcaaataacactgcaataacaagagtgccgttttcagtagtaaagtccaaaagcattgcatatatttccttgtgtggata 5181866  T
Q  208 tgaaggattctcacgtgatg 227  Q
    |||||||||||||| |||||    
T  5181865 tgaaggattctcacatgatg 5181846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 15 - 204
Target Start/End: Original strand, 5447537 - 5447726
Alignment:
Q  15 caaggagcatctataatttgaaatgtctgaaaactctcattctttccgggtgtataatgattggcgtgttggaagaggacatagaacaaatggaatcttt 114  Q
    |||| ||||||||||| ||||||| | ||||||||||||||||||| || ||| ||| ||||| |  | ||||||||||| | ||||| |||||||||||    
T  5447537 caagaagcatctataagttgaaatctttgaaaactctcattctttctggttgtttaaagattgacaagctggaagaggacttggaacagatggaatcttt 5447636  T
Q  115 aaccactctgcttgcaagtaacactgcaataacaagagtgcccttgtcaatagtaaggtcaaaaagtattgtatatatttctttgtgcgg 204  Q
    ||||||||||||||||| ||| ||| ||||||||| ||||||||| ||  |||| ||||| || || |||| ||||||||||||||||||    
T  5447637 aaccactctgcttgcaaataatacttcaataacaacagtgcccttttcggtagttaggtcgaagagcattggatatatttctttgtgcgg 5447726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 20 - 204
Target Start/End: Complemental strand, 5284515 - 5284331
Alignment:
Q  20 agcatctataatttgaaatgtctgaaaactctcattctttccgggtgtataatgattggcgtgttggaagaggacatagaacaaatggaatctttaacca 119  Q
    ||||||||||| ||||||| ||| |||||| |||||||||  ||||||  |||||||| |  ||||||||||||| ||||||| |||  |||||||||||    
T  5284515 agcatctataagttgaaatctctaaaaactttcattctttttgggtgttcaatgattgacaagttggaagaggacttagaacagatgacatctttaacca 5284416  T
Q  120 ctctgcttgcaagtaacactgcaataacaagagtgcccttgtcaatagtaaggtcaaaaagtattgtatatatttctttgtgcgg 204  Q
    ||||| | || | |||||| |||||||||||||||||||| ||| |||||||||| ||||| |||| ||||||| ||||||||||    
T  5284415 ctctgatagctaataacaccgcaataacaagagtgcccttttcagtagtaaggtcgaaaagcattggatatattgctttgtgcgg 5284331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 5433985 - 5434191
Alignment:
Q  15 caaggagcatctataatttgaaatgtctgaaaactctcattctttccgggtgtataatgattggcgtgttggaagaggacatagaacaaatggaatcttt 114  Q
    |||| ||||| ||||| ||||||| | ||||||||||||| ||| | || ||| ||| ||||| |   |||||||| ||| | ||||| |||||||||||    
T  5433985 caagaagcatatataagttgaaatctttgaaaactctcatccttactggctgtttaaagattgacaatttggaagatgacttggaacatatggaatcttt 5434084  T
Q  115 aaccactctgcttgcaagtaacactgcaataacaagagtgcccttgtcaatagtaaggtcaaaaagtattgtatatatttctttgtgcggccgtgaagga 214  Q
    ||||||||||||||||| |||||||||||||| |||||||||  | ||| || | || |||||||| |||| |||||| |||||||||||   |||||||    
T  5434085 aaccactctgcttgcaaataacactgcaataaaaagagtgcctctttcagtactgagatcaaaaagcattggatatatctctttgtgcggttatgaagga 5434184  T
Q  215 ttctcac 221  Q
    |||||||    
T  5434185 ttctcac 5434191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 156
Target Start/End: Complemental strand, 5257465 - 5257324
Alignment:
Q  15 caaggagcatctataatttgaaatgtctgaaaactctcattctttccgggtgtataatgattggcgtgttggaagaggacatagaacaaatggaatcttt 114  Q
    |||| ||||||||||| ||||||| ||| |||||| |||||||||| ||||||  |||||||| |  ||||||||||||| ||||||| |||  ||||||    
T  5257465 caagaagcatctataagttgaaatctctaaaaactttcattctttctgggtgttcaatgattgacaagttggaagaggacttagaacagatgacatcttt 5257366  T
Q  115 aaccactctgcttgcaagtaacactgcaataacaagagtgcc 156  Q
    |||||||||  |||||| ||||||||||||||||||||||||    
T  5257365 aaccactctaattgcaaataacactgcaataacaagagtgcc 5257324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 168
Target Start/End: Original strand, 5447112 - 5447260
Alignment:
Q  20 agcatctataatttgaaatgtctgaaaactctcattctttccgggtgtataatgattggcgtgttggaagaggacatagaacaaatggaatctttaacca 119  Q
    ||||||||||| ||||||| | ||||||||||| ||||||| || ||| ||| ||||| |  | ||||||||||| | ||  ||||||||||||||||||    
T  5447112 agcatctataagttgaaatctttgaaaactctcgttctttctggttgtttaaagattgacaaggtggaagaggacttcgagaaaatggaatctttaacca 5447211  T
Q  120 ctctgcttgcaagtaacactgcaataacaagagtgcccttgtcaatagt 168  Q
    |||| ||||||| ||||||| ||||||||| | | ||||| ||||||||    
T  5447212 ctcttcttgcaaataacacttcaataacaacaatacccttatcaatagt 5447260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 45 - 227
Target Start/End: Original strand, 5281280 - 5281462
Alignment:
Q  45 aaactctcattctttccgggtgtataatgattggcgtgttggaagaggacatagaacaaatggaatctttaaccactctgcttgcaagtaacactgcaat 144  Q
    ||||||| |||||||| ||||||  |||||||  |  ||| ||||||||| | |||||||||||||| ||||| || ||| |||| | | ||||||||||    
T  5281280 aaactctgattctttctgggtgttcaatgattaacaagttagaagaggacttggaacaaatggaatccttaacgaccctgattgctaatgacactgcaat 5281379  T
Q  145 aacaagagtgcccttgtcaatagtaaggtcaaaaagtattgtatatatttctttgtgcggccgtgaaggattctcacgtgatg 227  Q
    ||||||||| |||||  || ||| |||||  ||||  |||| |||||||||||| ||||||  | ||||||||||||||||||    
T  5281380 aacaagagttccctttgcagtaggaaggttgaaaaacattggatatatttctttctgcggctataaaggattctcacgtgatg 5281462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 8 - 225
Target Start/End: Original strand, 5396893 - 5397110
Alignment:
Q  8 agccttacaaggagcatctataatttgaaatgtctgaaaactctcattctttccgggtgtataatgattggcgtgttggaagaggacatagaacaaatgg 107  Q
    |||||| |||| || || ||||| |||||||  ||  |||||||  ||||||| |||||| || |||||| |   |||||||| ||  | ||||| ||||    
T  5396893 agccttccaagaagtatttataagttgaaatcactacaaactcttcttctttctgggtgtttactgattgacaaattggaagaagatttggaacagatgg 5396992  T
Q  108 aatctttaaccactctgcttgcaagtaacactgcaataacaagagtgcccttgtcaatagtaaggtcaaaaagtattgtatatatttctttgtgcggccg 207  Q
    |||||||||||||  || |||||| |||||||||||||| ||||||||| || |||||  |||||| |||||| |||| || ||| |||||||||||       
T  5396993 aatctttaaccaccttggttgcaaataacactgcaataaaaagagtgccgttttcaattttaaggttaaaaagcattggatttatctctttgtgcggata 5397092  T
Q  208 tgaaggattctcacgtga 225  Q
    ||||||||| ||| ||||    
T  5397093 tgaaggattttcatgtga 5397110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 45 - 227
Target Start/End: Original strand, 5179521 - 5179703
Alignment:
Q  45 aaactctcattctttccgggtgtataatgattggcgtgttggaagaggacatagaacaaatggaatctttaaccactctgcttgcaagtaacactgcaat 144  Q
    ||||||| |||||||| ||||||  || ||||  |  ||||||||||||| | ||| |||||||||| ||||| || ||| |||| | | ||||||||||    
T  5179521 aaactctgattctttctgggtgttcaaagattaacaagttggaagaggacttggaagaaatggaatccttaacgaccctgattgctaatgacactgcaat 5179620  T
Q  145 aacaagagtgcccttgtcaatagtaaggtcaaaaagtattgtatatatttctttgtgcggccgtgaaggattctcacgtgatg 227  Q
    ||| ||||| |||||  || ||| |||||  ||||  |||| |||||||||||| ||||||  | ||||||||||||||||||    
T  5179621 aactagagttccctttgcagtaggaaggttgaaaaacattggatatatttctttctgcggctataaaggattctcacgtgatg 5179703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 5244012 - 5243910
Alignment:
Q  1 ccttcgtagccttacaaggagcatctataatttgaaatgtctgaaaactctcattctttccgggtgtataatgattggcgtgttggaagaggacatagaa 100  Q
    |||||| |||||| |||| ||||||||||| ||||||| |||||||||| ||||||| || ||||||||||||||||    ||||||||||||| | |||    
T  5244012 ccttcgaagccttccaagaagcatctataagttgaaatctctgaaaactttcattctctcagggtgtataatgattgagaagttggaagaggacttggaa 5243913  T
Q  101 caa 103  Q
    |||    
T  5243912 caa 5243910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 145 - 227
Target Start/End: Complemental strand, 5243914 - 5243832
Alignment:
Q  145 aacaagagtgcccttgtcaatagtaaggtcaaaaagtattgtatatatttctttgtgcggccgtgaaggattctcacgtgatg 227  Q
    ||||||||||||||| ||| |||||||||||||||| || | ||||||||||||||| |||  ||||||||| ||||| ||||    
T  5243914 aacaagagtgcccttttcagtagtaaggtcaaaaagcatcggatatatttctttgtgtggctatgaaggattttcacgcgatg 5243832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 8877545 - 8877771
Alignment:
Q  1 ccttcgtagccttacaaggagcatctataatttgaaatgtctgaaaactctcattctttccgggtgtataatgattggcgtgttggaagaggacatagaa 100  Q
    |||||| |||||| |||| || || || || ||||||| ||| ||| ||||||||||||| ||||||  |||||||| |  |||||| |||||| |||||    
T  8877545 ccttcggagccttccaagaagtatatacaagttgaaatctctaaaatctctcattctttctgggtgttcaatgattgacaagttggaggaggacttagaa 8877644  T
Q  101 caaatggaatctttaaccactctgcttgcaagtaacactgcaataacaagagtgcccttgtcaatagtaaggtcaaaaagtattgtatatatttctttgt 200  Q
    || ||| |||||||||||||||||||||||| |||||||||||||| |||||| || || ||| |||||||||||||||| |||| ||||||||||||||    
T  8877645 cagatgaaatctttaaccactctgcttgcaaataacactgcaataaaaagagtaccattttcattagtaaggtcaaaaagcattggatatatttctttgt 8877744  T
Q  201 gcggccgtgaaggattctcacgtgatg 227  Q
    |||||  ||||||||| || |||||||    
T  8877745 gcggctatgaaggattttcgcgtgatg 8877771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 5e-49; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 4344582 - 4344808
Alignment:
Q  1 ccttcgtagccttacaaggagcatctataatttgaaatgtctgaaaactctcattctttccgggtgtataatgattggcgtgttggaagaggacatagaa 100  Q
    |||| ||| |||| |||| | ||||||||  ||||||| |||||||||||||||||| || || ||| ||||||||| |  ||||||||||||| | |||    
T  4344582 cctttgtaaccttccaagaaacatctatacgttgaaatctctgaaaactctcattctatctggatgtttaatgattgacaagttggaagaggacttggaa 4344681  T
Q  101 caaatggaatctttaaccactctgcttgcaagtaacactgcaataacaagagtgcccttgtcaatagtaaggtcaaaaagtattgtatatatttctttgt 200  Q
    |||||||||||||||||||||||| |||||| ||||||||| ||||||| ||| ||||| ||| |||||||||||||| | |||| || |||||||||||    
T  4344682 caaatggaatctttaaccactctgattgcaaataacactgctataacaaaagtacccttttcagtagtaaggtcaaaacgcattggatttatttctttgt 4344781  T
Q  201 gcggccgtgaaggattctcacgtgatg 227  Q
    | ||   ||||||||||||||||||||    
T  4344782 gtggatatgaaggattctcacgtgatg 4344808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 4361013 - 4361239
Alignment:
Q  1 ccttcgtagccttacaaggagcatctataatttgaaatgtctgaaaactctcattctttccgggtgtataatgattggcgtgttggaagaggacatagaa 100  Q
    |||| ||| |||| |||| | ||||||||  ||||||| |||||||||||||||||| || || |||  |||||||| |  ||||||||||||| | |||    
T  4361013 cctttgtaaccttccaagaaacatctatacgttgaaatctctgaaaactctcattctatctggatgttcaatgattgacacgttggaagaggacttggaa 4361112  T
Q  101 caaatggaatctttaaccactctgcttgcaagtaacactgcaataacaagagtgcccttgtcaatagtaaggtcaaaaagtattgtatatatttctttgt 200  Q
    |||||||||||||||||||||||| |||||| ||||||||  ||||||| ||| ||||| ||||| ||||| |||||| | |||| || |||||||||||    
T  4361113 caaatggaatctttaaccactctgattgcaaataacactggtataacaaaagtacccttttcaattgtaagatcaaaacgcattggatttatttctttgt 4361212  T
Q  201 gcggccgtgaaggattctcacgtgatg 227  Q
    | ||   ||||||||||||||||||||    
T  4361213 gtggatatgaaggattctcacgtgatg 4361239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 32 - 227
Target Start/End: Complemental strand, 4124053 - 4123858
Alignment:
Q  32 ttgaaatgtctgaaaactctcattctttccgggtgtataatgattggcgtgttggaagaggacatagaacaaatggaatctttaaccactctgcttgcaa 131  Q
    ||||||| |||||||||||||||||| || || ||| ||||||||| |  ||||||||||||  | ||||||||||||||||||||||||||| ||||||    
T  4124053 ttgaaatctctgaaaactctcattctatcgggatgtttaatgattgacaagttggaagaggagttggaacaaatggaatctttaaccactctgattgcaa 4123954  T
Q  132 gtaacactgcaataacaagagtgcccttgtcaatagtaaggtcaaaaagtattgtatatatttctttgtgcggccgtgaaggattctcacgtgatg 227  Q
     ||| ||||| ||||||| ||||||||| ||  |||||||||||||||| |||| || ||||||| |||| ||   |||||||||||| |||||||    
T  4123953 ataatactgctataacaaaagtgcccttttcggtagtaaggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctctcgtgatg 4123858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 4320764 - 4320538
Alignment:
Q  1 ccttcgtagccttacaaggagcatctataatttgaaatgtctgaaaactctcattctttccgggtgtataatgattggcgtgttggaagaggacatagaa 100  Q
    |||| |||||||| |||| | ||||||||  ||||||  |||||| ||||||||||| || || ||| ||||||||| |  ||||||||||||| | |||    
T  4320764 cctttgtagccttccaagaaacatctatacgttgaaaactctgaatactctcattctatcgggatgtttaatgattgacaagttggaagaggacttggaa 4320665  T
Q  101 caaatggaatctttaaccactctgcttgcaagtaacactgcaataacaagagtgcccttgtcaatagtaaggtcaaaaagtattgtatatatttctttgt 200  Q
    |||||||||||||||||||| ||| |||||| ||| ||||  ||||||| ||| ||||| ||| |||||||||||||||| |||| || ||||||| |||    
T  4320664 caaatggaatctttaaccaccctgattgcaaataatactggtataacaaaagttcccttttcattagtaaggtcaaaaagcattggatttatttctctgt 4320565  T
Q  201 gcggccgtgaaggattctcacgtgatg 227  Q
    | ||   ||||||||||||||||||||    
T  4320564 gtggatatgaaggattctcacgtgatg 4320538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 4335281 - 4335507
Alignment:
Q  1 ccttcgtagccttacaaggagcatctataatttgaaatgtctgaaaactctcattctttccgggtgtataatgattggcgtgttggaagaggacatagaa 100  Q
    |||| ||| |||| |||| | ||||||||  ||||| | |||||||||||||||||| || || ||| ||| ||||| |  ||||||||||||| | |||    
T  4335281 cctttgtaaccttccaagaaacatctatacgttgaagtctctgaaaactctcattctatcaggatgtttaaagattgacaagttggaagaggacttggaa 4335380  T
Q  101 caaatggaatctttaaccactctgcttgcaagtaacactgcaataacaagagtgcccttgtcaatagtaaggtcaaaaagtattgtatatatttctttgt 200  Q
    |||||||||||||||||||||||  | |||  ||||||||  ||||||| ||||||||| ||| |||||| ||||||||| ||||  ||||| |||||||    
T  4335381 caaatggaatctttaaccactctcatggcagataacactggtataacaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgt 4335480  T
Q  201 gcggccgtgaaggattctcacgtgatg 227  Q
    | ||   |||||||||||| |||||||    
T  4335481 gtgggtatgaaggattctcccgtgatg 4335507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 4133568 - 4133375
Alignment:
Q  1 ccttcgtagccttacaaggagcatctataatttgaaatgtctgaaaactctcattctttccgggtgtataatgattggcgtgttggaagaggacatagaa 100  Q
    |||||||| |||| |||| | |||||||   ||||||| |||||||||||| |||||||| || ||| |||| |||| |   |||||||  ||| | |||    
T  4133568 ccttcgtaaccttccaagaaccatctattcgttgaaatctctgaaaactcttattctttctggctgtttaattattgacaaattggaag--gacttggaa 4133471  T
Q  101 caaatggaatctttaaccactctgcttgcaagtaacactgcaataacaagagtgcccttgtcaatagtaaggtcaaaaagtattgtatatatttct 196  Q
    |||||||| ||||||||||||||| |||    ||||||||||||||||| ||||||||| ||| | | |||||||||||| |||| ||||||||||    
T  4133470 caaatggagtctttaaccactctgattgtggataacactgcaataacaaaagtgcccttttcagtcgcaaggtcaaaaagcattgaatatatttct 4133375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 41 - 196
Target Start/End: Complemental strand, 7885496 - 7885341
Alignment:
Q  41 ctgaaaactctcattctttccgggtgtataatgattggcgtgttggaagaggacatagaacaaatggaatctttaaccactctgcttgcaagtaacactg 140  Q
    |||||||| |||||||| || || |||| ||  |||| |  ||| |||||||| |||||||||||| |||||||||||||  || ||||   | ||||||    
T  7885496 ctgaaaacactcattctgtctggatgtacaaaaattgacaagttagaagaggatatagaacaaatgaaatctttaaccaccttggttgcggatgacactg 7885397  T
Q  141 caataacaagagtgcccttgtcaatagtaaggtcaaaaagtattgtatatatttct 196  Q
    | || ||||||||||||||  || ||||||| |||||||| |||| || |||||||    
T  7885396 ctatcacaagagtgccctttgcagtagtaagatcaaaaagcattgcatttatttct 7885341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 137 - 227
Target Start/End: Original strand, 6728478 - 6728568
Alignment:
Q  137 actgcaataacaagagtgcccttgtcaatagtaaggtcaaaaagtattgtatatatttctttgtgcggccgtgaaggattctcacgtgatg 227  Q
    ||||| ||||||| |||||| || ||||||||||| |  |||||||||| ||||||||||||  | |||  ||||||||| ||||||||||    
T  6728478 actgctataacaaaagtgccattttcaatagtaagattgaaaagtattggatatatttcttttcgtggctttgaaggattttcacgtgatg 6728568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 137 - 227
Target Start/End: Original strand, 6753032 - 6753122
Alignment:
Q  137 actgcaataacaagagtgcccttgtcaatagtaaggtcaaaaagtattgtatatatttctttgtgcggccgtgaaggattctcacgtgatg 227  Q
    ||||| ||||||| ||||||||| ||||||||||| |  ||||| |||| ||||||||||||  | |||  ||||||||| ||||||||||    
T  6753032 actgctataacaaaagtgcccttttcaatagtaagattgaaaagcattggatatatttcttttcgtggctttgaaggattttcacgtgatg 6753122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 6822777 - 6822853
Alignment:
Q  151 agtgcccttgtcaatagtaaggtcaaaaagtattgtatatatttctttgtgcggccgtgaaggattctcacgtgatg 227  Q
    |||||| || ||||||||||| |  ||||| |||| |||||||||||| ||||||  ||||||||| ||||||||||    
T  6822777 agtgccattttcaatagtaagattgaaaagcattggatatatttctttatgcggctttgaaggattttcacgtgatg 6822853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 227
Target Start/End: Complemental strand, 6545457 - 6545367
Alignment:
Q  137 actgcaataacaagagtgcccttgtcaatagtaaggtcaaaaagtattgtatatatttctttgtgcggccgtgaaggattctcacgtgatg 227  Q
    ||||| ||||||| ||||||||| |||||||| || |  ||||| |||| ||||||||||||  | |||  ||||||||| ||||||||||    
T  6545457 actgctataacaaaagtgcccttttcaatagttagattgaaaagcattggatatatttcttttcgtggctttgaaggattttcacgtgatg 6545367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 227
Target Start/End: Complemental strand, 6588205 - 6588115
Alignment:
Q  137 actgcaataacaagagtgcccttgtcaatagtaaggtcaaaaagtattgtatatatttctttgtgcggccgtgaaggattctcacgtgatg 227  Q
    ||||| || |||| |||||| || ||||||||||||   ||||| |||| |||||||||||| || |||  ||||||||| ||||||||||    
T  6588205 actgccatcacaaaagtgccattttcaatagtaaggatgaaaagcattggatatatttctttttgtggctttgaaggattttcacgtgatg 6588115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 6498535 - 6498474
Alignment:
Q  137 actgcaataacaagagtgcccttgtcaatagtaaggtcaaaaagtattgtatatatttcttt 198  Q
    ||||| ||||||| ||| ||||| ||||||||||| |||||||| |||| ||| ||||||||    
T  6498535 actgctataacaaaagttcccttttcaatagtaagatcaaaaagcattggatacatttcttt 6498474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 193
Target Start/End: Original strand, 6761316 - 6761420
Alignment:
Q  89 gaggacatagaacaaatggaatctttaaccactctgcttgcaagtaacactgcaataacaagagtgcccttgtcaatagtaaggtcaaaaagtattgtat 188  Q
    |||||||||||||| |||||||| || || ||  || ||||   ||| ||||| ||||||| ||||||||| ||||| ||||| |  |||||||||| ||    
T  6761316 gaggacatagaacagatggaatcgttcacaaccttgattgcggataagactgctataacaaaagtgcccttttcaattgtaagattcaaaagtattggat 6761415  T
Q  189 atatt 193  Q
    |||||    
T  6761416 atatt 6761420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 227
Target Start/End: Complemental strand, 36213952 - 36213748
Alignment:
Q  23 atctataatttgaaatgtctgaaaactctcattctttccgggtgtataatgattggcgtgttggaagaggacatagaacaaatggaatctttaaccactc 122  Q
    |||||||| || ||||  || ||||||||||||||||| || |||  || ||||| |   |||||||||||||| ||||| |||||||||||||||||      
T  36213952 atctataagttaaaattacttaaaactctcattctttctggatgttcaaagattgacaaattggaagaggacatggaacagatggaatctttaaccacct 36213853  T
Q  123 tgcttgcaagtaacactgcaataacaagagtgcccttgtcaatagtaaggtcaaaaagtattgtatatatttctttgtgcggccgtgaaggattctcacg 222  Q
    || |||||| |||||||||||||||||||||||| || ||| ||||||| || ||||| || |  ||||| ||||||||||||  ||||||||||||||     
T  36213852 tgattgcaaataacactgcaataacaagagtgccattttcagtagtaagatctaaaagcatcgcttatatatctttgtgcggctatgaaggattctcaca 36213753  T
Q  223 tgatg 227  Q
    |||||    
T  36213752 tgatg 36213748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 195
Target Start/End: Original strand, 18935403 - 18935516
Alignment:
Q  82 gttggaagaggacatagaacaaatggaatctttaaccactctgcttgcaagtaacactgcaataacaagagtgcccttgtcaatagtaaggtcaaaaagt 181  Q
    ||||||||||||||||||||| |||  |||||| ||||| ||| ||||   ||| |||||  ||||||||||||||||  || ||||||| ||||||||     
T  18935403 gttggaagaggacatagaacagatgacatctttgaccaccctggttgcggataagactgctgtaacaagagtgccctttgcagtagtaagatcaaaaagc 18935502  T
Q  182 attgtatatatttc 195  Q
    |||| || ||||||    
T  18935503 attggatttatttc 18935516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 82 - 214
Target Start/End: Complemental strand, 22584278 - 22584146
Alignment:
Q  82 gttggaagaggacatagaacaaatggaatctttaaccactctgcttgcaagtaacactgcaataacaagagtgcccttgtcaatagtaaggtcaaaaagt 181  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||||| | | |||||||||| || |||||| || |||||| | |||||||||| |    
T  22584278 gttggaagaggacttggaacaaatggaatctttaaccactctgcttgcaaatgaaactgcaataaaaaaagtgccattttcaatatttaggtcaaaaact 22584179  T
Q  182 attgtatatatttctttgtgcggccgtgaagga 214  Q
    |||   || ||||||||||| |||  |||||||    
T  22584178 atttggtacatttctttgtgtggctatgaagga 22584146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 35 - 175
Target Start/End: Complemental strand, 47986963 - 47986823
Alignment:
Q  35 aaatgtctgaaaactctcattctttccgggtgtataatgattggcgtgttggaagaggacatagaacaaatggaatctttaaccactctgcttgcaagta 134  Q
    |||| ||| ||||||||||||||||| || ||| ||| ||||  |  ||||||||||||||| ||| ||||| |||||||||| ||| || |||||| ||    
T  47986963 aaatctctaaaaactctcattctttctggctgtttaaagattaacaagttggaagaggacatggaataaatgaaatctttaactactttggttgcaaata 47986864  T
Q  135 acactgcaataacaagagtgcccttgtcaatagtaaggtca 175  Q
    ||||||| |||||||||||||| || ||| |||| ||||||    
T  47986863 acactgcgataacaagagtgcctttatcagtagtgaggtca 47986823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 35 - 175
Target Start/End: Complemental strand, 47996250 - 47996110
Alignment:
Q  35 aaatgtctgaaaactctcattctttccgggtgtataatgattggcgtgttggaagaggacatagaacaaatggaatctttaaccactctgcttgcaagta 134  Q
    |||| ||| ||||||||||||||||| || ||| ||| ||||  |  ||||||||||||||| ||| ||||| |||||||||| ||| || |||||| ||    
T  47996250 aaatctctaaaaactctcattctttctggctgtttaaagattaacaagttggaagaggacatggaataaatgaaatctttaactactttggttgcaaata 47996151  T
Q  135 acactgcaataacaagagtgcccttgtcaatagtaaggtca 175  Q
    ||||||| |||||||||||||| || ||| |||| ||||||    
T  47996150 acactgcgataacaagagtgcctttatcagtagtgaggtca 47996110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 35 - 175
Target Start/End: Complemental strand, 48005537 - 48005397
Alignment:
Q  35 aaatgtctgaaaactctcattctttccgggtgtataatgattggcgtgttggaagaggacatagaacaaatggaatctttaaccactctgcttgcaagta 134  Q
    |||| ||| ||||||||||||||||| || ||| ||| ||||  |  ||||||||||||||| ||| ||||| |||||||||| ||| || |||||| ||    
T  48005537 aaatctctaaaaactctcattctttctggctgtttaaagattaacaagttggaagaggacatggaataaatgaaatctttaactactttggttgcaaata 48005438  T
Q  135 acactgcaataacaagagtgcccttgtcaatagtaaggtca 175  Q
    ||||||| |||||||||||||| || ||| |||| ||||||    
T  48005437 acactgcgataacaagagtgcctttatcagtagtgaggtca 48005397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 35 - 175
Target Start/End: Complemental strand, 48014822 - 48014682
Alignment:
Q  35 aaatgtctgaaaactctcattctttccgggtgtataatgattggcgtgttggaagaggacatagaacaaatggaatctttaaccactctgcttgcaagta 134  Q
    |||| ||| ||||||||||||||||| || ||| ||| ||||  |  ||||||||||||||| ||| ||||| |||||||||| ||| || |||||| ||    
T  48014822 aaatctctaaaaactctcattctttctggctgtttaaagattaacaagttggaagaggacatggaataaatgaaatctttaactactttggttgcaaata 48014723  T
Q  135 acactgcaataacaagagtgcccttgtcaatagtaaggtca 175  Q
    ||||||| |||||||||||||| || ||| |||| ||||||    
T  48014722 acactgcgataacaagagtgcctttatcagtagtgaggtca 48014682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University