View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5176_low_67 (Length: 238)

Name: NF5176_low_67
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5176_low_67
NF5176_low_67
[»] chr8 (4 HSPs)
chr8 (69-221)||(3058311-3058480)
chr8 (73-221)||(3062616-3062781)
chr8 (73-221)||(26082916-26083081)
chr8 (76-124)||(26065168-26065216)
[»] chr1 (4 HSPs)
chr1 (73-221)||(4877259-4877422)
chr1 (73-221)||(4872957-4873122)
chr1 (118-221)||(30189939-30190042)
chr1 (73-124)||(30189876-30189928)
[»] chr6 (1 HSPs)
chr6 (73-221)||(6667979-6668144)
[»] chr4 (5 HSPs)
chr4 (73-221)||(17439419-17439584)
chr4 (73-221)||(17443721-17443886)
chr4 (1-71)||(31496281-31496351)
chr4 (1-59)||(31476353-31476411)
chr4 (2-67)||(31151061-31151126)
[»] chr3 (2 HSPs)
chr3 (120-183)||(28010300-28010363)
chr3 (73-101)||(28013761-28013789)


Alignment Details
Target: chr8 (Bit Score: 114; Significance: 6e-58; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 69 - 221
Target Start/End: Original strand, 3058311 - 3058480
Alignment:
Q  69 ttactgttgagacattgagatttcagatgtacacaatagtattttgtgatatt-----------------ttaatgtagtagttgaagttacctctgcag 151  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||                 ||||||||||||||||||||||||||||||    
T  3058311 ttactgttgagacattgagatttcagatgtacacaatagtattttgtgatattttatgttttcttttattttaatgtagtagttgaagttacctctgcag 3058410  T
Q  152 aagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatg 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3058411 aagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatg 3058480  T

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Target: chr8; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 73 - 221
Target Start/End: Original strand, 3062616 - 3062781
Alignment:
Q  73 tgttgagacattgagatttcagatgtacacaatagtattttgtgatatt-----------------ttaatgtagtagttgaagttacctctgcagaagt 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||                 ||||||||||||||||||||||||||||||||||    
T  3062616 tgttgagacattgagatttcagatgtacacaatagtattttgtgatattttatgttttcttttattttaatgtagtagttgaagttacctctgcagaagt 3062715  T
Q  156 atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatg 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3062716 atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatg 3062781  T

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Target: chr8; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 73 - 221
Target Start/End: Complemental strand, 26083081 - 26082916
Alignment:
Q  73 tgttgagacattgagatttcagatgtacacaatagtattttgtgatatttta-----------------atgtagtagttgaagttacctctgcagaagt 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||    
T  26083081 tgttgagacattgagatttcagatgtacacaatagtattttgtgatattttatgttttcttttattttaatgtagtagttgaagttacctctgcagaagt 26082982  T
Q  156 atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatg 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26082981 atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatg 26082916  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 26065216 - 26065168
Alignment:
Q  76 tgagacattgagatttcagatgtacacaatagtattttgtgatatttta 124  Q
    |||||||||||||||||||||  | ||||||||||||||||||||||||    
T  26065216 tgagacattgagatttcagattaatacaatagtattttgtgatatttta 26065168  T

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Target: chr1 (Bit Score: 114; Significance: 6e-58; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 73 - 221
Target Start/End: Original strand, 4877259 - 4877422
Alignment:
Q  73 tgttgagacattgagatttcagatgtacacaatagtattttgtgatatt---------------ttaatgtagtagttgaagttacctctgcagaagtat 157  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||               ||||||||||||||||||||||||||||||||||||    
T  4877259 tgttgagacattgagatttcagatgtacacaatagtattttgtgatattttgttttcttttattttaatgtagtagttgaagttacctctgcagaagtat 4877358  T
Q  158 ggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatg 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4877359 ggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatg 4877422  T

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Target: chr1; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 73 - 221
Target Start/End: Original strand, 4872957 - 4873122
Alignment:
Q  73 tgttgagacattgagatttcagatgtacacaatagtattttgtgatatt-----------------ttaatgtagtagttgaagttacctctgcagaagt 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||                 ||||||||||||||||||||||||||||||||||    
T  4872957 tgttgagacattgagatttcagatgtacacaatagtattttgtgatattttattttttcttttattttaatgtagtagttgaagttacctctgcagaagt 4873056  T
Q  156 atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatg 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4873057 atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatg 4873122  T

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Target: chr1; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 118 - 221
Target Start/End: Original strand, 30189939 - 30190042
Alignment:
Q  118 tattttaatgtagtagttgaagttacctctgcagaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactac 217  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30189939 tattttaatgtagtagttgaagttacctctgcaaaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactac 30190038  T
Q  218 tatg 221  Q
    ||||    
T  30190039 tatg 30190042  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 30189876 - 30189928
Alignment:
Q  73 tgttgagacattgagatttcagatgtacacaatagta-ttttgtgatatttta 124  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  30189876 tgttgagacattgagctttcagatgtacacaatagtatttttgtgatatttta 30189928  T

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Target: chr6 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 73 - 221
Target Start/End: Complemental strand, 6668144 - 6667979
Alignment:
Q  73 tgttgagacattgagatttcagatgtacacaatagtattttgtgatatttta-----------------atgtagtagttgaagttacctctgcagaagt 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||    
T  6668144 tgttgagacattgagatttcagatgtacacaatagtattttgtgatattttattttttcttttattttaatgtagtagttgaagttacctctgcagaagt 6668045  T
Q  156 atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatg 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6668044 atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatg 6667979  T

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Target: chr4 (Bit Score: 110; Significance: 1e-55; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 73 - 221
Target Start/End: Complemental strand, 17439584 - 17439419
Alignment:
Q  73 tgttgagacattgagatttcagatgtacacaatagtattttgtgatatttta-----------------atgtagtagttgaagttacctctgcagaagt 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||    
T  17439584 tgttgagacattgagatttcagatgtacacaatagtattttgtgatattttatgttttcttttattttaatgtagtagttgaagttacctctgcagaagt 17439485  T
Q  156 atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatg 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17439484 atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatg 17439419  T

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Target: chr4; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 73 - 221
Target Start/End: Complemental strand, 17443886 - 17443721
Alignment:
Q  73 tgttgagacattgagatttcagatgtacacaatagtattttgtgatatttta-----------------atgtagtagttgaagttacctctgcagaagt 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||    
T  17443886 tgttgagacattgagatttcagatgtacacaatagtattttgtgatattttatgttttcttttattttaatgtagtagttgaagttacctctgcagaagt 17443787  T
Q  156 atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatg 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17443786 atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatg 17443721  T

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Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 31496351 - 31496281
Alignment:
Q  1 ttgagaaagcatagttccttgataagaccacaacaaaaacctgagagttttcaattgcacaaaggagctta 71  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31496351 ttgagaaagcatagttccttgataagaccacaacaaaaacctgagagttttcaattgcacaaaggagctta 31496281  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 31476411 - 31476353
Alignment:
Q  1 ttgagaaagcatagttccttgataagaccacaacaaaaacctgagagttttcaattgca 59  Q
    |||||||||| |||||| |||| ||||||||||| |||||||||||   ||||||||||    
T  31476411 ttgagaaagcgtagttctttgacaagaccacaacgaaaacctgagacccttcaattgca 31476353  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 31151061 - 31151126
Alignment:
Q  2 tgagaaagcatagttccttgataagaccacaacaaaaacctgagagttttcaattgcacaaaggag 67  Q
    |||| ||||||||||| | || || ||||||||||||| |||||||| ||||||||| | ||||||    
T  31151061 tgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggag 31151126  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 120 - 183
Target Start/End: Complemental strand, 28010363 - 28010300
Alignment:
Q  120 ttttaatgtagtagttgaagttacctctgcagaagtatggtgacccatacttgttagagtgttt 183  Q
    ||||||| |||| |||||||||||||||||| |||||||||||||||||||||||  |||||||    
T  28010363 ttttaatatagttgttgaagttacctctgcataagtatggtgacccatacttgttgaagtgttt 28010300  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 101
Target Start/End: Complemental strand, 28013789 - 28013761
Alignment:
Q  73 tgttgagacattgagatttcagatgtaca 101  Q
    |||||||||||||||||||||||||||||    
T  28013789 tgttgagacattgagatttcagatgtaca 28013761  T

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