View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5176_low_68 (Length: 238)
Name: NF5176_low_68
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5176_low_68 |
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Alignment Details
Target: chr1 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 28462063 - 28462161
Alignment:
| Q |
1 |
tttcacacatgtataaaatatataagtttactcgtagaaggtaaatgaactcacaatgatggtggatatggaagtcggaatccgaggaggtggagatga |
99 |
Q |
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| T |
28462063 |
tttcacacatgtataaaatatataagtttactcgtagaaggtaaatgaactcacaatgatggtggatatggaagtcggaatccgaggaggtggagatga |
28462161 |
T |
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Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 125 - 222
Target Start/End: Original strand, 28462131 - 28462228
Alignment:
| Q |
125 |
tggaaatcggaatccgaggagatggagatgatgggtgatgttgaattgtaggaggaattcatgacggccgtgtgctccttaatagaggtagaaattgg |
222 |
Q |
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| T |
28462131 |
tggaagtcggaatccgaggaggtggagatgatgggtgatgttgaattgtaggaggaattcatgacggccgtgtgctccttaatagaggtagaaattgg |
28462228 |
T |
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