View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5176_low_7 (Length: 572)
Name: NF5176_low_7
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5176_low_7 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 10 - 572
Target Start/End: Complemental strand, 33349610 - 33349051
Alignment:
| Q |
10 |
attatactataaaagaacaatcatgtgttagtgccaatggtctaaaaattcattatagaattgaagaggacgggatacaactaaggtgagtagctttaga |
109 |
Q |
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| T |
33349610 |
attatactataaaagaacaatcatgtgttggtgccaatggtctgaaaattcattatagaattggagaggacgggatacaactagggttagtagctttaga |
33349511 |
T |
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| Q |
110 |
attcattcatagatactcaacagaaagtattactcatacttcaatccaacactatttaacttcaatttgcactgctggtgttttaattgtgtttagttta |
209 |
Q |
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| T |
33349510 |
attcattcatagatactcaatagaaagtattactcatacttcaatccaacactatttgactccaatttacactgctcgtgttttaattgtgtttagttta |
33349411 |
T |
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| Q |
210 |
gcagtgggcaatcaccaccttaattttgaattttttagaagctctaattgggtatcttaggatctaccatcattttttactataattttcgtgttttcca |
309 |
Q |
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| T |
33349410 |
gcagtaggcaatcaccaccttaattttgaattttttagaagctctaatt-ggtatcttaggatctaccatcattttttactataattttcgtgttttcca |
33349312 |
T |
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| Q |
310 |
aatagacacaataaaaaagacaagatcttataaataatttttgtgtagacataaagatttagatacatcatttgtttatccacacacnnnnnnntagaaa |
409 |
Q |
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| T |
33349311 |
aatagacacaat-aaaaagacaagatcttataaataatttttgtatagacataaagatttagacacatcatttgttcacacacaca-aaaaaaatagaaa |
33349214 |
T |
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| Q |
410 |
taataataactaaataatttatgtgcgactcaatattcaaatttttgtttccgcttcaaaattattaagattgtacaggtaatattgttgtacttgactt |
509 |
Q |
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| T |
33349213 |
taataataactaaataatttatgtgtgactcaatattcaaatttttgtttccgctccaaaattattaagattgtacgggtaataatgttatacttgaatt |
33349114 |
T |
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| Q |
510 |
tacaaacgagtagtattgtacttgattttggtggtgtctaacttcaataatgttacacatgaa |
572 |
Q |
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| T |
33349113 |
tacaaacgagtagtgttgtacttgattttggtgttttctcacttcaataatgttacacatgaa |
33349051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 25233548 - 25233593
Alignment:
| Q |
14 |
tactataaaagaacaatcatgtgttagtgccaatggtctaaaaatt |
59 |
Q |
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| T |
25233548 |
tactataaaaggacaaccatgtgttagtgccaagggtctgaaaatt |
25233593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 5369842 - 5369906
Alignment:
| Q |
14 |
tactataaaagaacaatcatgtgttagtgccaatggtctaaaaattcattatagaattgaagagg |
78 |
Q |
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| T |
5369842 |
tactataaaaggacaacaatgtgtcggtgccaatggtccaaaaattcattacagaattggagagg |
5369906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 17596331 - 17596402
Alignment:
| Q |
2 |
gtgggtaga-ttatactataaaagaacaatcatgtgttagtgccaatggtctaaaaattcattatagaattg |
72 |
Q |
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| T |
17596331 |
gtgggtagaattgtactataaaaggacacccatgtgttagtgccaagggtccaaaaattcatcttagaattg |
17596402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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