View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5176_low_71 (Length: 226)

Name: NF5176_low_71
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5176_low_71
NF5176_low_71
[»] chr6 (19 HSPs)
chr6 (18-211)||(27604346-27604539)
chr6 (18-205)||(26802801-26802983)
chr6 (18-205)||(27592663-27592848)
chr6 (18-205)||(27679305-27679490)
chr6 (18-205)||(27677262-27677442)
chr6 (18-205)||(27706046-27706230)
chr6 (18-120)||(28786677-28786778)
chr6 (18-120)||(28792798-28792899)
chr6 (22-120)||(27427260-27427356)
chr6 (18-111)||(28781549-28781641)
chr6 (18-93)||(27698228-27698301)
chr6 (45-105)||(26646932-26646992)
chr6 (45-105)||(26752900-26752960)
chr6 (20-104)||(26143322-26143404)
chr6 (20-104)||(25538997-25539079)
chr6 (160-205)||(27530983-27531028)
chr6 (45-105)||(25483512-25483572)
chr6 (47-105)||(26056375-26056433)
chr6 (47-105)||(26076345-26076403)
[»] scaffold0003 (1 HSPs)
scaffold0003 (22-120)||(60007-60103)
[»] chr4 (6 HSPs)
chr4 (22-120)||(18074199-18074295)
chr4 (18-116)||(18655115-18655211)
chr4 (18-116)||(18723723-18723819)
chr4 (18-110)||(18731142-18731232)
chr4 (18-109)||(18699038-18699127)
chr4 (18-116)||(18679198-18679301)
[»] scaffold0419 (1 HSPs)
scaffold0419 (18-111)||(7935-8027)
[»] scaffold0277 (2 HSPs)
scaffold0277 (18-111)||(13317-13409)
scaffold0277 (18-120)||(4354-4457)
[»] chr1 (3 HSPs)
chr1 (22-120)||(267994-268094)
chr1 (62-111)||(28164048-28164097)
chr1 (47-111)||(28127333-28127397)


Alignment Details
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 27604346 - 27604539
Alignment:
Q  18 acatcacaatcacatccatgtacactcagaatatattatacatttctaactattttgacatataaataactaatacttgtttaaaaacgtaaatgaaaaa 117  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27604346 acatcataatcacatccatgtacactcagaatatattatacatttctaactattttgacatataaataactaatacttgtttaaaaacgtaaataaaaaa 27604445  T
Q  118 ggtatttgatctcatttaaccttgaatatgagattatagggtaattgaaattgaataaagaaaatacaaaagggaaaaataggatttatgtagt 211  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27604446 ggtatttgatctcatttaaccttgaatatgagattattgggtaattgaaattgaataaagaaaatacaaaagggaaaaataggatttatgtagt 27604539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 26802983 - 26802801
Alignment:
Q  18 acatcacaatcacatccatgtacactcagaatatattatacatttctaactattttgacatataaataactaatacttgtttaaaaacgtaaatgaaaaa 117  Q
    |||||||||||||||||||||||  ||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| || | |||    
T  26802983 acatcacaatcacatccatgtac--tcataatatattatacatttctaactatttcaacatataaataactaatacttgtttaaaaacgtatataagaaa 26802886  T
Q  118 ggtatttgatctcatttaaccttgaatatgagattatagggtaattgaaattgaataaagaaaatacaaaagggaaaaataggattta 205  Q
    ||||||   || ||||||||||| || |||||||||| ||| ||||||| ||||| ||| |||||| |||||||||||||||||||||    
T  26802885 ggtatt---tcccatttaacctttaagatgagattattgggaaattgaagttgaagaaataaaatataaaagggaaaaataggattta 26802801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 27592663 - 27592848
Alignment:
Q  18 acatcacaatcacatccatgtacactcagaatatattatacatttctaactattttgacatataaataactaa---tacttgtttaaaaacgtaaatgaa 114  Q
    |||||||||||||||||||||||  | ||||| |||||||||||||||||||||| |||||||||||||||||   |||||||||||||  ||| || ||    
T  27592663 acatcacaatcacatccatgtac--taagaatgtattatacatttctaactatttcgacatataaataactaatagtacttgtttaaaactgtatataaa 27592760  T
Q  115 aaaggtatttgatctcatttaaccttgaatatgagattatagggtaattgaaattgaataaagaaaatacaaaagggaaaaataggattta 205  Q
    |||||||||   || | ||||||||| || |||||||||| |   ||||||| ||||| ||| |||||| |||||||||||||||||||||    
T  27592761 aaaggtatt---tcccttttaacctttaagatgagattattgtaaaattgaagttgaagaaataaaatagaaaagggaaaaataggattta 27592848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 27679490 - 27679305
Alignment:
Q  18 acatcacaatcacatccatgtacactcagaatatattatacatttctaactattttgacatataaataactaa---tacttgtttaaaaacgtaaatgaa 114  Q
    |||||||||||||||||||||||  | ||||| |||||||||||||||||||||| |||||||||||||||||   |||||||||||||  ||| || ||    
T  27679490 acatcacaatcacatccatgtac--taagaatgtattatacatttctaactatttcgacatataaataactaatagtacttgtttaaaactgtatataaa 27679393  T
Q  115 aaaggtatttgatctcatttaaccttgaatatgagattatagggtaattgaaattgaataaagaaaatacaaaagggaaaaataggattta 205  Q
    |||||||||   || | ||||||||| || |||||||||| |   ||||||| ||||| ||| |||||| |||||||||||||||||||||    
T  27679392 aaaggtatt---tcccttttaacctttaagatgagattattgtaaaattgaagttgaagaaataaaatagaaaagggaaaaataggattta 27679305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 27677262 - 27677442
Alignment:
Q  18 acatcacaatcacatccatgtacactcagaatatattatacatttctaactattttgacatataaataactaatacttgtttaaaaac-gtaaatgaaaa 116  Q
    |||||||||||||||||||||||      ||| |||||||||||||||||||||| ||||||||||||||||||| |  ||| ||||| ||| || ||||    
T  27677262 acatcacaatcacatccatgtact-----aatgtattatacatttctaactatttcgacatataaataactaatagtacttttaaaactgtatataaaaa 27677356  T
Q  117 aggtatttgatctcatttaaccttgaatatgagattatagggtaattgaaattgaataaagaaaatacaaaagggaaaaataggattta 205  Q
    |||||||   || | ||||||||| || |||||||||| | | ||||||| ||||| ||| |||||| |||||||||||||||||||||    
T  27677357 aggtatt---tcccttttaacctttaagatgagattattgtgaaattgaagttgaagaaataaaatagaaaagggaaaaataggattta 27677442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 27706046 - 27706230
Alignment:
Q  18 acatcacaatcacatccatgtacactcagaatatattatacatttctaactattttgacatataaataactaa---tacttgtttaaaaacgtaaatgaa 114  Q
    ||||| |||||||||||||||||  | ||||| |||||| ||||||||||||||| |||||||||||||||||   |||||||||||||  ||| || ||    
T  27706046 acatcccaatcacatccatgtac--taagaatgtattattcatttctaactatttcgacatataaataactaatagtacttgtttaaaactgtatataaa 27706143  T
Q  115 aaaggtatttgatctcatttaaccttgaatatgagattatagggtaattgaaattgaataaagaaaatacaaaagggaaaaataggattta 205  Q
    ||||||||||     | ||||| ||| || |||||||||| | | ||||||| ||||| ||| |||||| |||||||||||||||||||||    
T  27706144 aaaggtattt----ccctttaaactttaagatgagattattgtgaaattgaagttgaagaaataaaatagaaaagggaaaaataggattta 27706230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 28786778 - 28786677
Alignment:
Q  18 acatcacaatcacatccatgtacactcagaatatattatacatttctaactattttgacatataaataact-aatacttgtttaaaaacgtaaatgaaaa 116  Q
    |||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||  |||    
T  28786778 acatcacaatcacatccatgtac--tcagaatatagtatacatttctaactattttgacataaaaataattaaatacttgtttaaaaacgtaaatagaaa 28786681  T
Q  117 aggt 120  Q
    ||||    
T  28786680 aggt 28786677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 28792899 - 28792798
Alignment:
Q  18 acatcacaatcacatccatgtacactcagaatatattatacatttctaactattttgacatataaataact-aatacttgtttaaaaacgtaaatgaaaa 116  Q
    |||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||  |||    
T  28792899 acatcacaatcacatccatgtac--tcagaatatagtatacatttctaactattttgacataaaaataattaaatacttgtttaaaaacgtaaatagaaa 28792802  T
Q  117 aggt 120  Q
    ||||    
T  28792801 aggt 28792798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 22 - 120
Target Start/End: Original strand, 27427260 - 27427356
Alignment:
Q  22 cacaatcacatccatgtacactcagaatatattatacatttctaactattttgacatataaataactaatacttgtttaaaaacgtaaatgaaaaaggt 120  Q
    |||||||||||||||||||  ||| |||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||| ||||| ||||||||    
T  27427260 cacaatcacatccatgtac--tcataatatattatacatttttaactattttgacatataaataactaacaattgtttaaaaacataaataaaaaaggt 27427356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 28781641 - 28781549
Alignment:
Q  18 acatcacaatcacatccatgtacactcagaatatattatacatttctaactattttgacatataaataact-aatacttgtttaaaaacgtaaat 111  Q
    |||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||| |||||| | |||| ||||||||||||||||||    
T  28781641 acatcacaatcacatccatgtac--tcagaatatagtatacatttctaactattttgacataaaaataattaaataattgtttaaaaacgtaaat 28781549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 27698228 - 27698301
Alignment:
Q  18 acatcacaatcacatccatgtacactcagaatatattatacatttctaactattttgacatataaataactaatac 93  Q
    |||||||||||||||| ||||||  ||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  27698228 acatcacaatcacatctatgtac--tcagaatatattataaatttctaactatttcgacatataaataactaatac 27698301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 45 - 105
Target Start/End: Complemental strand, 26646992 - 26646932
Alignment:
Q  45 agaatatattatacatttctaactattttgacatataaataactaatacttgtttaaaaac 105  Q
    ||||||||||||||| |||||||| ||||||||||||||||| | ||||||||||||||||    
T  26646992 agaatatattatacagttctaactcttttgacatataaataatttatacttgtttaaaaac 26646932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 45 - 105
Target Start/End: Complemental strand, 26752960 - 26752900
Alignment:
Q  45 agaatatattatacatttctaactattttgacatataaataactaatacttgtttaaaaac 105  Q
    ||||||||||||||| |||||||| ||||||||||||||||| | ||||||||||||||||    
T  26752960 agaatatattatacagttctaactcttttgacatataaataatttatacttgtttaaaaac 26752900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 26143404 - 26143322
Alignment:
Q  20 atcacaatcacatccatgtacactcagaatatattatacatttctaactattttgacatataaataactaatacttgtttaaaaa 104  Q
    |||| |||||||||||||||   | |||||||||||| || |||||||| ||||||||||||||||||| | |||||||| ||||    
T  26143404 atcaaaatcacatccatgtat--tgagaatatattatgcaattctaacttttttgacatataaataacttacacttgttttaaaa 26143322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 25539079 - 25538997
Alignment:
Q  20 atcacaatcacatccatgtacactcagaatatattatacatttctaactattttgacatataaataactaatacttgtttaaaaa 104  Q
    |||| |||||||||||||||   | |||||||||||| || |||||| | ||||||||||||||||||| | |||||||| ||||    
T  25539079 atcaaaatcacatccatgtat--tgagaatatattatgcaattctaatttttttgacatataaataacttacacttgttttaaaa 25538997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 27530983 - 27531028
Alignment:
Q  160 aattgaaattgaataaagaaaatacaaaagggaaaaataggattta 205  Q
    |||||||||| || |||||||||| |||||||||||||||||||||    
T  27530983 aattgaaattaaagaaagaaaatataaaagggaaaaataggattta 27531028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 105
Target Start/End: Complemental strand, 25483572 - 25483512
Alignment:
Q  45 agaatatattatacatttctaactattttgacatataaataactaatacttgtttaaaaac 105  Q
    ||||||||| || || |||||||| ||||||||||||||||||| | |||||||| |||||    
T  25483572 agaatatatcatgcaattctaacttttttgacatataaataacttacacttgttttaaaac 25483512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 105
Target Start/End: Complemental strand, 26056433 - 26056375
Alignment:
Q  47 aatatattatacatttctaactattttgacatataaataactaatacttgtttaaaaac 105  Q
    |||||||||| || |||||||| ||||||||||||||||||| | ||| |||| |||||    
T  26056433 aatatattatgcaattctaacttttttgacatataaataacttacactagttttaaaac 26056375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 105
Target Start/End: Complemental strand, 26076403 - 26076345
Alignment:
Q  47 aatatattatacatttctaactattttgacatataaataactaatacttgtttaaaaac 105  Q
    |||||||||| || |||||||| ||||||||||||||||||| | ||| |||| |||||    
T  26076403 aatatattatgcaattctaacttttttgacatataaataacttacactagttttaaaac 26076345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 22 - 120
Target Start/End: Complemental strand, 60103 - 60007
Alignment:
Q  22 cacaatcacatccatgtacactcagaatatattatacatttctaactattttgacatataaataactaatacttgtttaaaaacgtaaatgaaaaaggt 120  Q
    |||||||||||||||||||  ||| |||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||| ||||| ||||||||    
T  60103 cacaatcacatccatgtac--tcataatatattatacatttttaactattttgacatataaataactaacaattgtttaaaaacataaataaaaaaggt 60007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 22 - 120
Target Start/End: Complemental strand, 18074295 - 18074199
Alignment:
Q  22 cacaatcacatccatgtacactcagaatatattatacatttctaactattttgacatataaataactaatacttgtttaaaaacgtaaatgaaaaaggt 120  Q
    |||||||||||||||||||  ||| |||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||| ||||| ||||||||    
T  18074295 cacaatcacatccatgtac--tcataatatattatacatttttaactattttgacatataaataactaacaattgtttaaaaacataaataaaaaaggt 18074199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 18655115 - 18655211
Alignment:
Q  18 acatcacaatcacatccatgtacactcagaatatattatacatttctaactattttgacatataaataactaatacttgtttaaaaacgtaaatgaaaa 116  Q
    |||||||| |||||||||| |||  ||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||    
T  18655115 acatcacagtcacatccatttac--tcataatatatcatacatttctaactattttgacttataaataactaatacttgtttaaaaatgtaaataaaaa 18655211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 18723723 - 18723819
Alignment:
Q  18 acatcacaatcacatccatgtacactcagaatatattatacatttctaactattttgacatataaataactaatacttgtttaaaaacgtaaatgaaaa 116  Q
    |||||||| |||||||||| |||  ||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||    
T  18723723 acatcacagtcacatccatttac--tcataatatatcatacatttctaactattttgacttataaataactaatacttgtttaaaaatgtaaataaaaa 18723819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 18731142 - 18731232
Alignment:
Q  18 acatcacaatcacatccatgtacactcagaatatattatacatttctaactattttgacatataaataactaatacttgtttaaaaacgtaaa 110  Q
    |||||||| |||||||||||| |  ||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  18731142 acatcacagtcacatccatgtcc--tcataatatatcatacatttctaactattttgacttataaataactaatacttgtttaaaaatgtaaa 18731232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 18699038 - 18699127
Alignment:
Q  18 acatcacaatcacatccatgtacactcagaatatattatacatttctaactattttgacatataaataactaatacttgtttaaaaacgtaa 109  Q
    |||||||| |||||||||||| |  ||| | ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  18699038 acatcacagtcacatccatgtcc--tcatagtatatcatacatttctaactattttgacttataaataactaatacttgtttaaaaacgtaa 18699127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 18679198 - 18679301
Alignment:
Q  18 acatcacaatcacatccatgtacactcagaatatattatacatttctaa-------ctattttgacatataaataactaatacttgtttaaaaacgtaaa 110  Q
    |||||||| ||||| ||||||||  ||| ||||||| ||||||||||||       |||||||||| |||||||||||||||||||||||||||||||||    
T  18679198 acatcacagtcacacccatgtac--tcataatatatcatacatttctaaattcaaactattttgacttataaataactaatacttgtttaaaaacgtaaa 18679295  T
Q  111 tgaaaa 116  Q
    | ||||    
T  18679296 taaaaa 18679301  T

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Target: scaffold0419 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 8027 - 7935
Alignment:
Q  18 acatcacaatcacatccatgtacactcagaatatattatacatttctaactattttgacatataaataact-aatacttgtttaaaaacgtaaat 111  Q
    |||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||| || ||| | |||||||||||||||||||||||    
T  8027 acatcacaatcacatccatgtac--tcagaatatagtatacatttctaactattttgacataaaagtaattaaatacttgtttaaaaacgtaaat 7935  T

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Target: scaffold0277 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 13317 - 13409
Alignment:
Q  18 acatcacaatcacatccatgtacactcagaatatattatacatttctaactattttgacatataaataact-aatacttgtttaaaaacgtaaat 111  Q
    |||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||| || ||| | |||||||||||||||||||||||    
T  13317 acatcacaatcacatccatgtac--tcagaatatagtatacatttctaactattttgacataaaagtaattaaatacttgtttaaaaacgtaaat 13409  T

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Target: scaffold0277; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 4354 - 4457
Alignment:
Q  18 acatcacaatcacatccatgtacactcagaatatat--tatacatttctaactattttgacatataaataactaa-tacttgtttaaaaacgtaaatgaa 114  Q
    |||||||||||||||||||||||  ||| |||||||  |||||||||||||||||| ||||||| || ||| ||| |||||||||||||||||||||  |    
T  4354 acatcacaatcacatccatgtac--tcataatatatggtatacatttctaactattgtgacataaaagtaattaaatacttgtttaaaaacgtaaatata 4451  T
Q  115 aaaggt 120  Q
    ||||||    
T  4452 aaaggt 4457  T

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Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 22 - 120
Target Start/End: Original strand, 267994 - 268094
Alignment:
Q  22 cacaatcacatccatgtac--actcagaatatattatacatttctaactattttgacatataaataactaatacttgtttaaaaacgtaaatgaaaaagg 119  Q
    |||||||||||||||| |   ||||| |||||||||||| ||||||||||||| | |||||||| ||||||||||| |||| |||||||||| |||||||    
T  267994 cacaatcacatccatgcatgtactcaaaatatattatacgtttctaactatttcgtcatataaacaactaatacttatttagaaacgtaaataaaaaagg 268093  T
Q  120 t 120  Q
    |    
T  268094 t 268094  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 28164048 - 28164097
Alignment:
Q  62 tctaactattttgacatataaataactaatacttgtttaaaaacgtaaat 111  Q
    |||||||||||||||||||||||| || |||||||||||||||| |||||    
T  28164048 tctaactattttgacatataaatatcttatacttgtttaaaaacataaat 28164097  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 28127333 - 28127397
Alignment:
Q  47 aatatattatacatttctaactattttgacatataaataactaatacttgtttaaaaacgtaaat 111  Q
    |||| ||||||||  ||| |||||||||||||||||||| || |||||||||||||||| |||||    
T  28127333 aatacattatacaactctgactattttgacatataaataccttatacttgtttaaaaacataaat 28127397  T

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