View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5176_low_72 (Length: 225)
Name: NF5176_low_72
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5176_low_72 |
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| [»] chr1 (4 HSPs) |
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| [»] scaffold1463 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 6 - 225
Target Start/End: Original strand, 48099173 - 48099392
Alignment:
| Q |
6 |
agttataactaacaaatttccctgaagaggaaggagcttattagattagttttgaaaatgaagaaatacctgatttggttgaggattgacacttgtttct |
105 |
Q |
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| T |
48099173 |
agttataactaacaaatttccctgaagaggaaggagcttattagattagttttgaaaatgaagaaatacctgatttggttgaggattgacacttgtttct |
48099272 |
T |
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| Q |
106 |
gtgagccatataggaagtccagttgcaccaagaagatctagacttgacctcatgtaagcatagtttggtcgaccaagtctaaaatggccttgcaccccaa |
205 |
Q |
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| T |
48099273 |
gtgagccatataggaagtccagttgcaccaagaagatctagacttgacctcatgtaagcatagtttggtcgaccaagtctaaaatggccttgcaccccaa |
48099372 |
T |
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| Q |
206 |
tggccaatgatattccagca |
225 |
Q |
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| T |
48099373 |
tggccaatgatattccagca |
48099392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 68 - 165
Target Start/End: Original strand, 48066290 - 48066387
Alignment:
| Q |
68 |
gaaatacctgatttggttgaggattgacacttgtttctgtgagccatataggaagtccagttgcaccaagaagatctagacttgacctcatgtaagca |
165 |
Q |
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| T |
48066290 |
gaaatacctgatttggattagaatccacactactttcagtgagccatataggaagtccagttgcaccaagaagatctagacctgacctcatgtaagca |
48066387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 71 - 225
Target Start/End: Original strand, 48062204 - 48062358
Alignment:
| Q |
71 |
atacctgatttggttgaggattgacacttgtttctgtgagccatataggaagtccagttgcaccaagaagatctagacttgacctcatgtaagcatagtt |
170 |
Q |
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| T |
48062204 |
atacctgatttggctgaggatccacactggtttctgtgagccatataggaagtccagttgctgcaagaagatcaagacctgacctcatatatgcaatgtt |
48062303 |
T |
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| Q |
171 |
tggtcgaccaagtctaaaatggccttgcaccccaatggccaatgatattccagca |
225 |
Q |
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| T |
48062304 |
tggcacgccacttgaaaaatggcactgcaaccctatggccaatgatattccagca |
48062358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 71 - 165
Target Start/End: Original strand, 48105839 - 48105933
Alignment:
| Q |
71 |
atacctgatttggttgaggattgacacttgtttctgtgagccatataggaagtccagttgcaccaagaagatctagacttgacctcatgtaagca |
165 |
Q |
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| T |
48105839 |
atacctgatttggctgaggatccaaactggcttctgtgagccatattggaaatccaatattaccaagaaaatctagacctgacctcatgtaagca |
48105933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 68 - 165
Target Start/End: Original strand, 50230959 - 50231056
Alignment:
| Q |
68 |
gaaatacctgatttggttgaggattgacacttgtttctgtgagccatataggaagtccagttgcaccaagaagatctagacttgacctcatgtaagca |
165 |
Q |
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| T |
50230959 |
gaaatacctgatttggattagaatccacactactttcagtgagccatataggaagtccagttgcaccaagatgatctagacctgacctcatgtaagca |
50231056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1463 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1463
Description:
Target: scaffold1463; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 137
Target Start/End: Complemental strand, 1237 - 1168
Alignment:
| Q |
68 |
gaaatacctgatttggttgaggattgacacttgtttctgtgagccatataggaagtccagttgcaccaag |
137 |
Q |
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| T |
1237 |
gaaataccagatttggattagaatccacactactttcagtgagccatataggaagttcagttgcaccaag |
1168 |
T |
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