View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5176_low_75 (Length: 215)
Name: NF5176_low_75
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5176_low_75 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 14 - 198
Target Start/End: Original strand, 33720993 - 33721177
Alignment:
| Q |
14 |
gcagagaccatggggaaaatgggctgctgagattcgtgacccgagacgtgcggttcgtgtttggcttggaacctttaccacggcggaggaagctgctaga |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33720993 |
gcagagaccatggggaaaatgggctgctgagattcgtgacccgagacgtgcggttcgtgtttggcttggaacctttaccacggcggaggaagctgctaga |
33721092 |
T |
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| Q |
114 |
gcttacgacaatgccgctatcgagttccgcgggccgagagccaagcttaattttccacttgttgatgaatcccttaagcgtactg |
198 |
Q |
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| T |
33721093 |
gcttacgacaatgccgctatcgagttccgcgggccgagagccaagcttaattttccacttgttgatgaatctcttaagcgtactg |
33721177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 15 - 192
Target Start/End: Original strand, 33718975 - 33719152
Alignment:
| Q |
15 |
cagagaccatggggaaaatgggctgctgagattcgtgacccgagacgtgcggttcgtgtttggcttggaacctttaccacggcggaggaagctgctagag |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
33718975 |
cagagaccatggggaaaatgggctgctgagattcgtgacccgagacgtgctgttcgtgtttggctcggaacctttaccacggcggaggaagctgccagag |
33719074 |
T |
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| Q |
115 |
cttacgacaatgccgctatcgagttccgcgggccgagagccaagcttaattttccacttgttgatgaatcccttaagc |
192 |
Q |
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| T |
33719075 |
cttatgacaatgccgccatcgagtttcgtgggccgagggcaaagctcaattttccacttgttgatgaatcccttaagc |
33719152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 14 - 191
Target Start/End: Original strand, 33735647 - 33735824
Alignment:
| Q |
14 |
gcagagaccatggggaaaatgggctgctgagattcgtgacccgagacgtgcggttcgtgtttggcttggaacctttaccacggcggaggaagctgctaga |
113 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
33735647 |
gcagaggccatggggaaaatgggctgctgagattcgtgaccctagacgtgcggtccgtgtttggcttggaacctttaccacggcggaggaagctgccaga |
33735746 |
T |
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| Q |
114 |
gcttacgacaatgccgctatcgagttccgcgggccgagagccaagcttaattttccacttgttgatgaatcccttaag |
191 |
Q |
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| T |
33735747 |
gcttacgacaatgctgctattgagttccgtgggccaagggccaagctcaattttccagtcgttgatgaatcgcttaag |
33735824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 33750451 - 33750625
Alignment:
| Q |
18 |
agaccatggggaaaatgggctgctgagattcgtgacccgagacgtgcggttcgtgtttggcttggaacctttaccacggcggaggaagctgctagagctt |
117 |
Q |
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| T |
33750451 |
agaccatggggtaaatgggctgctgaaattcgtgacccgagacgtgccacccgtgtttggctcggaacattttccacggcggaggaagctgccagagctt |
33750550 |
T |
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| Q |
118 |
acgacaatgccgctatcgagttccgcgggccgagagccaagcttaattttccacttgttgatgaatcccttaagc |
192 |
Q |
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| T |
33750551 |
atgacaatgctgccatcgagttccgtgggccgagggccaaactcaattttccaatggttgatgattcacttaagc |
33750625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 21 - 124
Target Start/End: Original strand, 39360347 - 39360450
Alignment:
| Q |
21 |
ccatggggaaaatgggctgctgagattcgtgacccgagacgtgcggttcgtgtttggcttggaacctttaccacggcggaggaagctgctagagcttacg |
120 |
Q |
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|||||||||||||||||||| ||||||||||| || ||| | ||||||||||||||||| || || | ||| || || ||||||||||||||||||| |
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| T |
39360347 |
ccatggggaaaatgggctgcagagattcgtgatccaagaaaaggagttcgtgtttggcttggtacattcaacactgctgaagaagctgctagagcttacg |
39360446 |
T |
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| Q |
121 |
acaa |
124 |
Q |
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|||| |
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| T |
39360447 |
acaa |
39360450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 50
Target Start/End: Complemental strand, 50102306 - 50102277
Alignment:
| Q |
21 |
ccatggggaaaatgggctgctgagattcgt |
50 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
50102306 |
ccatggggaaaatgggctgctgagattcgt |
50102277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 45437332 - 45437432
Alignment:
| Q |
21 |
ccatggggaaaatgggctgctgagattcgtgacccgagacgtgcggttcgtgtttggcttggaacctttaccacggcggaggaagctgctagagcttacg |
120 |
Q |
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||||||||||||||||| |||||||| |||||||||||| | |||||||||||||| ||||| || | ||| || || |||||||| ||||| |||| |
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| T |
45437332 |
ccatggggaaaatgggcagctgagatccgtgacccgagaaaaggagttcgtgtttggctcggaactttcaacactgctgaagaagctgcaagagcctacg |
45437431 |
T |
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| Q |
121 |
a |
121 |
Q |
| |
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| |
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| T |
45437432 |
a |
45437432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 6568903 - 6568943
Alignment:
| Q |
15 |
cagagaccatggggaaaatgggctgctgagattcgtgaccc |
55 |
Q |
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| T |
6568903 |
cagagaccatggggaaaatgggcagctgaaatacgtgaccc |
6568943 |
T |
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