View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5176_low_76 (Length: 213)
Name: NF5176_low_76
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5176_low_76 |
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Alignment Details
Target: chr3 (Bit Score: 49; Significance: 3e-19; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 1403642 - 1403694
Alignment:
| Q |
12 |
agcagagatcaaatcctcaagtaaagtcaaaaacataattgtaggaagatctc |
64 |
Q |
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| T |
1403642 |
agcagagatcaaatcctcaagtaaagtcaaaaacataattgtgggaagatctc |
1403694 |
T |
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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 156
Target Start/End: Original strand, 1403848 - 1403890
Alignment:
| Q |
116 |
tcagaaacacata--gccatatgattataatacagaaaattta |
156 |
Q |
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| T |
1403848 |
tcagaaacacatatagccatatgattataatacagaaaattta |
1403890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 114
Target Start/End: Original strand, 1403711 - 1403745
Alignment:
| Q |
80 |
gtcataattagttgaagtgaaataaacattaaatc |
114 |
Q |
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| T |
1403711 |
gtcacaattagttgaagtgaaataaacattaaatc |
1403745 |
T |
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