View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5176_low_77 (Length: 211)
Name: NF5176_low_77
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5176_low_77 |
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| [»] scaffold1335 (1 HSPs) |
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| [»] scaffold1996 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 55; Significance: 9e-23; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 143 - 201
Target Start/End: Complemental strand, 35754274 - 35754216
Alignment:
| Q |
143 |
gctaatgattttggaggatcatcatacactaatttccataagttaattacacaggttct |
201 |
Q |
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| T |
35754274 |
gctaatgattttggaggatcatcatacactaatttccataagttaattacagaggttct |
35754216 |
T |
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Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 35754399 - 35754348
Alignment:
| Q |
18 |
gaatggaaattaacaatgatgtaaaaagggaggagataacagaacttgtact |
69 |
Q |
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| T |
35754399 |
gaatggaaattaacaatgatgtaaaaagggaagagataacagaacttgtact |
35754348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 189
Target Start/End: Complemental strand, 35848171 - 35848132
Alignment:
| Q |
150 |
attttggaggatcatcatacactaatttccataagttaat |
189 |
Q |
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| T |
35848171 |
atttgggaggatcatcatacaataatttccataagttaat |
35848132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 35774520 - 35774474
Alignment:
| Q |
20 |
atggaaattaacaatgatgtaaaaagggaggagataacagaacttgt |
66 |
Q |
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| T |
35774520 |
atggaaattaaccatgatgttaaaagggatgatataacagaacttgt |
35774474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1335 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1335
Description:
Target: scaffold1335; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 189
Target Start/End: Original strand, 92 - 131
Alignment:
| Q |
150 |
attttggaggatcatcatacactaatttccataagttaat |
189 |
Q |
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| T |
92 |
atttgggaggatcatcatacaataatttccataagttaat |
131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1996 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1996
Description:
Target: scaffold1996; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 1127 - 1173
Alignment:
| Q |
20 |
atggaaattaacaatgatgtaaaaagggaggagataacagaacttgt |
66 |
Q |
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| T |
1127 |
atggaaattaaccatgatgtgaaaagggaagagataaccgaacttgt |
1173 |
T |
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