View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5176_low_78 (Length: 208)
Name: NF5176_low_78
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5176_low_78 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 8 - 194
Target Start/End: Original strand, 23179113 - 23179299
Alignment:
| Q |
8 |
atgtcgaaaaatattgcatttcgtcgcttttcctctggctgnnnnnnnaatagacaggataccagcaaaacataattaacatcagtatatgataagaagc |
107 |
Q |
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| T |
23179113 |
atgtcgaacattattgcatttcgtcgcttttcctctggctgtttttttaatagacaggataccagcaaaacataattaacatcagtatatgataagaagc |
23179212 |
T |
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| Q |
108 |
gtaggaatgggtagagaacgaattgagaacaattaactgaaaatgcaaattaataaaacttaataaaggagagagctatactgttaa |
194 |
Q |
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| T |
23179213 |
gtgggaatgggtagagaacgaattgagaacaattaactgaaaatgcaaattaataaaacttaataaaggagagagctatactgttaa |
23179299 |
T |
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Back To:
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Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 8 - 129
Target Start/End: Original strand, 23891372 - 23891494
Alignment:
| Q |
8 |
atgtcgaaaaatattgcatttcgtcgcttttcctctggctgnnnnnnn-aatagacaggataccagcaaaacataattaacatcagtatatgataagaag |
106 |
Q |
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|||||||| | |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
23891372 |
atgtcgaacattattgcatttcgtcgcttttcctctggctgttttttttaatagacaggataccaacaaaacataattaacatcagtatatgataagaag |
23891471 |
T |
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| Q |
107 |
cgtaggaatgggtagagaacgaa |
129 |
Q |
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| T |
23891472 |
cgtgggaatgggtagagaacgaa |
23891494 |
T |
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