View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5176_low_9 (Length: 470)
Name: NF5176_low_9
Description: NF5176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5176_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 6 - 422
Target Start/End: Complemental strand, 32598773 - 32598356
Alignment:
| Q |
6 |
aggagcacagacgcaacaataatataataatttaatgacaaaagaaggtagcagtgagaaaacaatactatataaactctctctggcatcgtagaaaaaa |
105 |
Q |
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| T |
32598773 |
aggaacacaaacgcaacaataatataataatttaatgacaaaagaaggtagcagtgagaaaacaatactatataaactctctctggcatcgtagaaaaaa |
32598674 |
T |
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| Q |
106 |
cttgagagagaagagaaagtagaacaatatggtcaactaatgaggagtactcaaccaatgggatttgggtcaatttcatttcattttcacccttttctac |
205 |
Q |
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| T |
32598673 |
cttgagagagaagagaaagtagaacaatatggtgaactaatgaggagtactcaaccaatgggatttgggtcaatttcatttcattttcacctttttctac |
32598574 |
T |
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| Q |
206 |
catttaccttcattcttcaattcatatgaattcggttttcttaatgcaattattcagaagaacctgagtttgattccttagtgaacaatttttagtcaga |
305 |
Q |
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| T |
32598573 |
catttaccttcattcttcaattcatatgaattcggttttcttaatgcaattattcagaagaacctgagtttgattccttagtgaacaatttttagtcaga |
32598474 |
T |
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| Q |
306 |
ctttgctt-nnnnnnnncaaggtcaagtctatagtgcacaaatgagacacattttccatcatgcacgagtaagttttcaccatttgatcaataagtttca |
404 |
Q |
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| T |
32598473 |
ctttacttaaaaaaaaacaaggtcaagtctatagtgcacaaatgagacacattttccatcatgcacaagtaagtttttgccatttgatcaataagtttca |
32598374 |
T |
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| Q |
405 |
tcgccaaatcattgtcaa |
422 |
Q |
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| T |
32598373 |
tcgccaaatcattgtcaa |
32598356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 35790287 - 35790344
Alignment:
| Q |
130 |
caatatggtcaactaatgaggagtactcaaccaatgggatttgggtcaatttcatttcatt |
190 |
Q |
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| T |
35790287 |
caatatggtcaactaatgagg---acttaaccactaggatttgggtcattttcatttcatt |
35790344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 373
Target Start/End: Original strand, 35052461 - 35052502
Alignment:
| Q |
332 |
tctatagtgcacaaatgagacacattttccatcatgcacgag |
373 |
Q |
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| T |
35052461 |
tctatagtgcacaagtgagacaaattttgcatcatgcacgag |
35052502 |
T |
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