View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5177-Insertion-3 (Length: 263)
Name: NF5177-Insertion-3
Description: NF5177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5177-Insertion-3 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 8 - 263
Target Start/End: Original strand, 48053873 - 48054128
Alignment:
| Q |
8 |
gcaactaacatcagagtttcattcctttatcaaaatttaaaggaagagttcaaaacataaacttcctggctttgactgaagctccaatttcagtaagtat |
107 |
Q |
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| T |
48053873 |
gcaactaacatcagagtttcattcctttatcaaaatttaaaggaagagttcaaaacgtaaacttcttggctttgactgaagctccaatttcagtaagtat |
48053972 |
T |
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| Q |
108 |
gacaataacaagaaaatacagaaatatttgacaggcttgatagttaaggcctagaaattacccctgccccaagaaacagaagcacagacagaaatctaac |
207 |
Q |
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| T |
48053973 |
gacaataacaagaaaatacagaaatatttgacaggcttgatagttaaggcctagaaattacccctgccccaagaaacagaagcatagacggaaatctaac |
48054072 |
T |
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| Q |
208 |
tgcagtatcaatcaaggtggtttctgatgcatagtttgatctgtctaatgcattta |
263 |
Q |
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| T |
48054073 |
tgcagtatcaatcaaggtggtttctgatgcatagtttgatctgtctaatgcattta |
48054128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 66 - 203
Target Start/End: Complemental strand, 29814198 - 29814061
Alignment:
| Q |
66 |
aaacttcctggctttgactgaagctccaatttcagtaagtatgacaataacaagaaaatacagaaatatttgacaggcttgatagttaaggcctagaaat |
165 |
Q |
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| T |
29814198 |
aaacttcttggctttgacagaagccctgatttcaataaatatgacaataacaagaaaatgcagaaaaattcgtgaagcacgatggttaaagcctagaaat |
29814099 |
T |
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| Q |
166 |
tacccctgccccaagaaacagaagcacagacagaaatc |
203 |
Q |
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| T |
29814098 |
tacccctgccccagaaaatgggagcatagacagaaatc |
29814061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 203
Target Start/End: Original strand, 48052744 - 48052797
Alignment:
| Q |
150 |
gttaaggcctagaaattacccctgccccaagaaacagaagcacagacagaaatc |
203 |
Q |
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| T |
48052744 |
gttaaggcctagatattatccctgccccaagaaatggaagcatagccagaaatc |
48052797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 48052671 - 48052727
Alignment:
| Q |
67 |
aacttcctggctttgactgaagctccaatttcagtaagtatgacaataacaagaaaa |
123 |
Q |
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| T |
48052671 |
aacttcttggccttgacagaatccccaatttcagtagatatgacaataacaagaaaa |
48052727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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