View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5177-Insertion-4 (Length: 242)
Name: NF5177-Insertion-4
Description: NF5177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5177-Insertion-4 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 8 - 242
Target Start/End: Complemental strand, 6313529 - 6313295
Alignment:
| Q |
8 |
gtgagctcagtggctattggttagacttctgtgacaagagacagatttagatttttggaaccttaaattgttgttgtggtacacgtggtactatactagt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6313529 |
gtgagctcagtggctattggttagacttctgtgacaagagacagatttagatttttggaaccttaaattgttgttgtggtacacgtggtactatactagt |
6313430 |
T |
|
| Q |
108 |
ggctagttcannnnnnnataaagaatatagtagtcagatagtgaagtgaaaccgactgttagataaaatattcattcaagttgatgaagacagatcaaga |
207 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6313429 |
ggctagttcacccccccataaagaatatagtagtcagatagtgaagtgaaaccgactgttagataaaatattcattcaagttgatgaagacagatcaaga |
6313330 |
T |
|
| Q |
208 |
accaccaccttgattataaaataaataaatgggct |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
6313329 |
accaccaccttgattataaaataaataaatgggct |
6313295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University