View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5177_high_10 (Length: 209)
Name: NF5177_high_10
Description: NF5177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5177_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 6313716 - 6313525
Alignment:
| Q |
1 |
atgcatgaataaaaa-gggagcacgcactaacataacattgatttatgttagttagtggagttagtaagagattgatgacaaagaaaggaaaacgtggtg |
99 |
Q |
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| T |
6313716 |
atgcatgaataaaaaagggagcacgcactaacataacattgatttatgttagttagtggagttagtaagagattgatgacaaagaaaggaaaacgtggtg |
6313617 |
T |
|
| Q |
100 |
gtttataagagacattgattgatgacaaagaacaaaaattgttcaccataaataatagagaaggtatagccatgtggcattgtgtttgtgag |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6313616 |
gtttataagagacattgattgatgacaaagaacaaaaaatgttcaccataaataatagagaaggtatagccatgtggcattgtgtttgtgag |
6313525 |
T |
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