View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5177_high_5 (Length: 273)
Name: NF5177_high_5
Description: NF5177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5177_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 2358757 - 2359014
Alignment:
| Q |
1 |
gttcatgctgacatgcatgtgcaggtatcatgatgttnnnnnnnnncaaacaaaattgctattgagtcacagataatacagtagtagataaaaacaaaag |
100 |
Q |
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| T |
2358757 |
gttcatgctgacatgcatgtgcatgtatcatgatgttaaagaaaaacaaacaaaattgctattgagtcacagataatacagtagtagataaaaacaaaag |
2358856 |
T |
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| Q |
101 |
gtgtgtggcttgtaaaattcatccttaatgagttgactcaactgtcaaattcatccttaatcatgtaggaagctctcaaataaatttttgaggttataag |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2358857 |
gtgtgtggcttgtcaaattcatccttaatgagttgactcaactgtcaaattcatccttaatcatgtaggaagctctcaaataaatttttgaggttataag |
2358956 |
T |
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| Q |
201 |
tatttcagaaagatctttggatctgtcaaattttcttgatatcactctttatgaaggt |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2358957 |
tatttcagaaagatctttggatctgtcaaattttcttgatatcactctttatgaaggt |
2359014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 31643356 - 31643470
Alignment:
| Q |
1 |
gttcatgctgacatgcatgtgcaggtatcatgatgttnnnnnnnnncaaacaaaattgctattgagtcacagataatacag--tagtagataaaaacaaa |
98 |
Q |
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||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
31643356 |
gttcatgctgacatgcatgtgcatgtatcatgatgttaaaaaaaaacaaacaaaattgctattgagtcacagataatacagtatagtagatagaaacaaa |
31643455 |
T |
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| Q |
99 |
aggtgtgtggcttgt |
113 |
Q |
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|||||||||| |||| |
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| T |
31643456 |
aggtgtgtggattgt |
31643470 |
T |
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