View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5177_high_7 (Length: 251)
Name: NF5177_high_7
Description: NF5177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5177_high_7 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 2358454 - 2358686
Alignment:
| Q |
18 |
aaaaattattctacccttatgtgacttaactcacgtatgtatataacccaacgtaatttaagtcattttaaaatacaaccaatataacttaaatcatgtt |
117 |
Q |
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| T |
2358454 |
aaaaattattctacc-ttacgtgacttaactcacgtatgtgtataacccaacgtgacttaagtcatattgaaatacaaccaatataacttaaattatgtt |
2358552 |
T |
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| Q |
118 |
tcgaataccgtgagttaactcatgttggtaacaaacatgcnnnnnnntttctttgcatatcaatataacatggtatagtatagagagagtataattaaat |
217 |
Q |
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|||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2358553 |
tcgaataccgtgagttaacttatgtcggtaacaaacatgcaaaaaaatttctttgcatatcaatataacatggtatagtatagagagagtgcaattaaat |
2358652 |
T |
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| Q |
218 |
ctagaaacaattgagcaccttgacacatttaaat |
251 |
Q |
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| T |
2358653 |
ctggaaacaattgagcaccttgacacatttaaat |
2358686 |
T |
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