View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5177_low_1 (Length: 522)
Name: NF5177_low_1
Description: NF5177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5177_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 10 - 506
Target Start/End: Complemental strand, 42751970 - 42751478
Alignment:
| Q |
10 |
aagaaaatagtttggacttcctagctatgtttggagcttctcccagtatagacctcttaattcatctcttatgattggcctcttggacctactctctcca |
109 |
Q |
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| T |
42751970 |
aagaaaatagtttggacttcctagctatgtttggagcttctcccagcatagatctcttagttcatctcttatgattggcctcttggacctactctctcca |
42751871 |
T |
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| Q |
110 |
tactctatgagaacttggttatgtagagcttaatttgcnnnnnnnnn-cctctccttttctggctttgtaattttagtcttttaaccnnnnnnntcaata |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42751870 |
tactctatgagaacttggttatgtagagcttaatttgcttttttttttcctctccttttctggctttgtaattttagtcttttaaccaaaaaaatcaata |
42751771 |
T |
|
| Q |
209 |
aattgtaaagctacatctatataatttctaatcaaaaattgcaacatgaacaattgaaaattttaattaaattaagtatcttctctttcatcatccataa |
308 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42751770 |
aattgtaaagctagatctatataatttctaatcaaaaattgcaacatgaacaattgaaaattctaattaaattaagtatcttctctttcatcatccataa |
42751671 |
T |
|
| Q |
309 |
aattatgactattaaatatgattcatcaaaagacaacaatattgattcaagtatagcaccatctcctctcgnnnnnnnnnnnnnnnngtataaatagcac |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
42751670 |
aattatgactattaaatatgattcatcaaaagacaacaatattgattcaagtatagcaccatctcctctcg-aaaaacaaaaaaaaagt----atagcac |
42751576 |
T |
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| Q |
409 |
catcttgagttgaatcatgcatatcttagttgaattctcacaactctgtttcaccttttttctaccgtttattttttctaagatacatattcacatgt |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42751575 |
catcttgagttgaatcatgcatatcttagttgaattctcacaactctgtttcaccttttttctaccgtttattttttctaagatacatattcacatgt |
42751478 |
T |
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