View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5177_low_2 (Length: 476)
Name: NF5177_low_2
Description: NF5177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5177_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 17 - 469
Target Start/End: Complemental strand, 48053878 - 48053423
Alignment:
| Q |
17 |
agttgcaataacctcattgtattttatgcaatggatctctaattttctcacagtaaaaaattgaattcatcga-gacaatgaaaagatacaaaggatatt |
115 |
Q |
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| T |
48053878 |
agttgcaataacctcactgtattttatgcaatggatctctaattttctcacagtaaaaaattgaattcatcgaagacaatgaaaagatacaaaggatatt |
48053779 |
T |
|
| Q |
116 |
gttctgatatttcataagtgggaagtcctacattttgcatttgacaactaaagtaagttacattttgcattctatgataaaatttaagttggacttgact |
215 |
Q |
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| T |
48053778 |
gttctgatatttcataagtgggaagtcctacattttgcatttgacaactaaagtaagttacattttgcattctatgataaaatttaagttggacttgact |
48053679 |
T |
|
| Q |
216 |
caactttacgaaaccacaacttgcaagcttagagattgctaaccacttatgcacgatcctataatgttatgtataatgtagcattcatttagcttgctag |
315 |
Q |
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| T |
48053678 |
caactttacaaaaccacaacttgcaaggttagagattgctaaccacttatgcacgatcctataatgttatgtataatgtagcattcatttagcttgctag |
48053579 |
T |
|
| Q |
316 |
cccaactctctctctttaatgattcctaatcctatctcggc--nnnnnnnngttaggggtcctttctcgtttggtatttctgctcatacagtgcagcatc |
413 |
Q |
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| T |
48053578 |
cccaactctctctctttaatgatatctaatcctatctcggcttttttttttgttaggggtcctttctcgtttggtatttctgctcatacagtgcagcatc |
48053479 |
T |
|
| Q |
414 |
ctcatgaatctcaatccttttcgtcttggctttttactacccaacagttcatctca |
469 |
Q |
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| T |
48053478 |
ctcatgaatctcaatccttttcatcttggctttttactacccaacagttcatctca |
48053423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 48052613 - 48052532
Alignment:
| Q |
20 |
tgcaataacctcattgtattttatgcaatggatctctaattttctcacagtaaaaaattgaattcatc-gagacaatgaaaa |
100 |
Q |
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| T |
48052613 |
tgcaataacctcactgtattttatgcattggatcgcttcttttcctacagttaaaaattgaattcatcaaagacaatgaaaa |
48052532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 459
Target Start/End: Complemental strand, 48049070 - 48048984
Alignment:
| Q |
373 |
tcctttctcgtttggtatttctgctcatacagtgcagcatcctcatgaatctcaatccttttcgtcttggctttttactacccaaca |
459 |
Q |
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| T |
48049070 |
tcctttctcgtctagtattgccactcatcaagtacagcatcctcatggacctcaatcctttttgtgctggctttttactacccaaca |
48048984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 48039639 - 48039558
Alignment:
| Q |
20 |
tgcaataacctcattgtattttatgcaatggatctctaattttctcacagtaaaaaattgaattcatc-gagacaatgaaaa |
100 |
Q |
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| T |
48039639 |
tgcaataacctcactgtattttatgcattggatatcttcttttcctacagttaacaattgaattcatcaaagacaatgaaaa |
48039558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 166 - 264
Target Start/End: Complemental strand, 48047931 - 48047825
Alignment:
| Q |
166 |
aagtaagttacattttgcattctatgataaaatttaagttggactt--------gactcaactttacgaaaccacaacttgcaagcttagagattgctaa |
257 |
Q |
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||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||| ||||||||||||| || |||||||||| | | |
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| T |
48047931 |
aagtaagttacattttgcattctatcttaaaatttaagttgagcttaactcaagtactcaactttacaaaaccacaacttggaatgttagagattggtca |
48047832 |
T |
|
| Q |
258 |
ccactta |
264 |
Q |
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| T |
48047831 |
ccactta |
48047825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 451
Target Start/End: Original strand, 29813262 - 29813348
Alignment:
| Q |
365 |
gttaggggtcctttctcgtttggtatttctgctcatacagtgcagcatcctcatgaatctcaatccttttcgtcttggctttttact |
451 |
Q |
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||||||| ||||| ||||| | ||||||| ||||| || ||||||||||||||| | | ||||| |||| || ||||||||||||| |
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| T |
29813262 |
gttagggatccttcctcgtctagtatttcccctcatccattgcagcatcctcatggaccacaatcttttttgtgttggctttttact |
29813348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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