View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5177_low_4 (Length: 355)
Name: NF5177_low_4
Description: NF5177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5177_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 10 - 347
Target Start/End: Original strand, 20648763 - 20649100
Alignment:
| Q |
10 |
gacatcatcaggagcagtatactcgggaacatgatcagtatacaaaacttcaatgctcttattgaagcgtttaataccatatctcataaagatgtaacca |
109 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||| ||||||| ||| | | ||||||||||||| |
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| T |
20648763 |
gacatcatcaggagcagtatactccggaacatgatcagtatacaaaactttcatgctcctattgaagggtttaatttcatctaccccaaagatgtaacca |
20648862 |
T |
|
| Q |
110 |
tcatcgatatcccaattgcgaaacataccagtatcaaatttcggtagaatttgttcccctcctacattcaatctatacaaagtttccatagctgaatcat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20648863 |
tcatcgatatcccaattgcgaaacataccagtatcatatttcggtagaatttgttcccctcctacattcaatctatacaaagtttccatagctgaatcat |
20648962 |
T |
|
| Q |
210 |
tataaatgtaaacaacatttgcatcctggccaactaaagcaataggggaatcatcaccaccaatgtataaaccatttggtattgaaacaacttcaatacc |
309 |
Q |
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|||||||||||||||| |||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20648963 |
tataaatgtaaacaacttttgtatcgtggccaactaaaggaataggggaatcatcaccaccaatgtataaaccatttggtattgaaacaacttcaatacc |
20649062 |
T |
|
| Q |
310 |
attcacaaatgcatatgcatcagaatcatttgatgatg |
347 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
20649063 |
attcacaaatgcatatgcatcagaatcatttgatgatg |
20649100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 10 - 347
Target Start/End: Original strand, 20632667 - 20633001
Alignment:
| Q |
10 |
gacatcatcaggagcagtatactcgggaacatgatcagtatacaaaacttcaatgctcttattgaagcgtttaataccatatctcataaagatgtaacca |
109 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||| | |||||| | ||||||||||||| |
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| T |
20632667 |
gacatcatcaggagcagtatactccggaacatgatcagtatacaaaactttcatgctcttattgaagtgtttaaaatcatatcccccaaagatgtaacca |
20632766 |
T |
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| Q |
110 |
tcatcgatatcccaattgcgaaacataccagtatcaaatttcggtagaatttgttcccctcctacattcaatctatacaaagtttccatagctgaatcat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20632767 |
tcatcgatatcccaattgcgaaacataccagtatcatatttcggtagaatttgttcccctcctacattcaatctatacaaagtttccatagctgaatcat |
20632866 |
T |
|
| Q |
210 |
tataaatgtaaacaacatttgcatcctggccaactaaagcaataggggaatcatcaccaccaatgtataaaccatttggtattgaaacaacttcaatacc |
309 |
Q |
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||||||||||||||| ||| ||| |||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20632867 |
tataaatgtaaacaa---ttgtatcgtggccagcgaaaggaataggggaatcatcaccaccaatgtataaaccatttggtattgaaacaacttcaatacc |
20632963 |
T |
|
| Q |
310 |
attcacaaatgcatatgcatcagaatcatttgatgatg |
347 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
20632964 |
attcacaaatgcatatgcatcagaatcatttgatgatg |
20633001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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