View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5177_low_5 (Length: 337)
Name: NF5177_low_5
Description: NF5177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5177_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 45143039 - 45142726
Alignment:
| Q |
1 |
gtagatatgacagatacaagaatgacattacaagtggctgtaaatctatcaaatgccccgccggaatagcaaaagacattttggtgaatgtcgacaaatt |
100 |
Q |
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| T |
45143039 |
gtagatatgacagatacaagaatgacattaaaagtggctgtaaatctatcaaatgccccgcccgaatagcaaaagacattttggtgaatgtcgacaaatt |
45142940 |
T |
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| Q |
101 |
cctcttcccagttgannnnnnnngtaatggacataaaggaagatgatggtgcccctctcatattgagaagaccatttatgaagactgctcgaatgatgat |
200 |
Q |
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| T |
45142939 |
cctcttcccagttgaatttttttgtaatggacataaaggaagatgatggtgcccctctcatattgagaagacaatttatgaagactgctcgtatgatgat |
45142840 |
T |
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| Q |
201 |
ctgacatggatgatggcaaaacgaagatgagagtagaggatgaagaaattggtttcaatttatttgaagctatgaagcattatgaagataatggagtatg |
300 |
Q |
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| T |
45142839 |
-tgacatggatgatggtaaaacgaagatgagagtagagga---------tggtttcaatttatttgaagctatgaagcattatgaagataatggagtatg |
45142750 |
T |
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| Q |
301 |
cttcaaagatggataccattgatga |
325 |
Q |
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|||| |||||||||||||||||||| |
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| T |
45142749 |
cttc-aagatggataccattgatga |
45142726 |
T |
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