View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5177_low_8 (Length: 258)
Name: NF5177_low_8
Description: NF5177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5177_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 38410214 - 38410458
Alignment:
| Q |
1 |
taaccaatcactcacatatttttgcatcatgcaggaaattttcgaacaatggaaagaagctaatgaggaagccaaagagaagatgtttgcagacttcatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38410214 |
taaccaatcactcacatatttttgcatcatgcaggaaattttcgaacaatggaaagaagctaatgaggaagccaaagagaagatgtttgcagacttcatg |
38410313 |
T |
|
| Q |
101 |
aataagaatgtgaatctcaacaaagtagatgaatctatgataatcactggaatagtggcaccaccagcagccatagtggctaaaagaacaggacaaacaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38410314 |
aataagaatgtgaatctcaacaaagtagatgaatctatgataatcgctggaatagtggcaccaccagcagccatagtggctaaaagaacaggacaaacaa |
38410413 |
T |
|
| Q |
201 |
catttcctcagctaaaatttatgaatgtcattcctgatgttatct |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38410414 |
catttcctcagctaaaatttatgaatgtcattcctgatgttatct |
38410458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 95 - 195
Target Start/End: Complemental strand, 937509 - 937409
Alignment:
| Q |
95 |
ttcatgaataagaatgtgaatctcaacaaagtagatgaatctatgataatcactggaatagtggcaccaccagcagccatagtggctaaaagaacaggac |
194 |
Q |
| |
|
||||||| ||||||||| ||| | | |||||||||||| |||||||| || ||||||||||||||||| |||||||| || || ||||| |||||||||| |
|
|
| T |
937509 |
ttcatgattaagaatgtaaatataagcaaagtagatgattctatgatgataactggaatagtggcacctccagcagctatggtagctaagagaacaggac |
937410 |
T |
|
| Q |
195 |
a |
195 |
Q |
| |
|
| |
|
|
| T |
937409 |
a |
937409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 196
Target Start/End: Complemental strand, 935734 - 935633
Alignment:
| Q |
95 |
ttcatgaataagaatgtgaatctcaacaaagtagatgaatctatgataatcactggaatagtggcaccaccagcagccatagtggctaaaagaacaggac |
194 |
Q |
| |
|
||||||| ||||||||| ||| | | || |||||||| |||||||| ||||| ||||||||||||| |||||||| || || |||| |||||||||| |
|
|
| T |
935734 |
ttcatgattaagaatgtaaatatgagtaatgtagatgattctatgatgatcaccagaatagtggcacctccagcagctatggtagctacgagaacaggac |
935635 |
T |
|
| Q |
195 |
aa |
196 |
Q |
| |
|
|| |
|
|
| T |
935634 |
aa |
935633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 18738044 - 18738081
Alignment:
| Q |
35 |
gaaattttcgaacaatggaaagaagctaatgaggaagc |
72 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
18738044 |
gaaatattcgaacaatggaaagaagctaatgaggaagc |
18738081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 18742938 - 18742975
Alignment:
| Q |
35 |
gaaattttcgaacaatggaaagaagctaatgaggaagc |
72 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
18742938 |
gaaatattcgaacaatggaaagaagctaatgaggaagc |
18742975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 35 - 94
Target Start/End: Original strand, 1539579 - 1539638
Alignment:
| Q |
35 |
gaaattttcgaacaatggaaagaagctaatgaggaagccaaagagaagatgtttgcagac |
94 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||| || ||| ||||||||||||||| |
|
|
| T |
1539579 |
gaaatattctaacaatggaaagaagctaatgaggaaggcagagaaaagatgtttgcagac |
1539638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University