View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5178-Insertion-3 (Length: 459)
Name: NF5178-Insertion-3
Description: NF5178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5178-Insertion-3 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 118 - 459
Target Start/End: Complemental strand, 38285990 - 38285649
Alignment:
| Q |
118 |
attcttgtactggtactgaagtacacacaatgaacatcaaggctcatatgttatccaagtttagcttcaccggcaacagaatctatcaacttgtggggtt |
217 |
Q |
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| T |
38285990 |
attcttgtactggtactgaagtacacacaatgaacatcaaggctcatatgttatccaagtttagcttcaccggcaacagaatctatcaacttgtggggtt |
38285891 |
T |
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| Q |
218 |
ttctggaatgaaaaatgtgacaacaattgtgttggacggtgtcggtgaatgtatatctagtaaattagtgtcacttttgttttctgtgtgtctccaactc |
317 |
Q |
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| T |
38285890 |
ttctggaatgaaaaatgtgacaacaattgtgttggacggtgtcggtgaatgtatatctagtaaattagtgtcacttttgttttctgtgtgtctccaactc |
38285791 |
T |
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| Q |
318 |
gaggacgtcaccttgaagaactacaacctcatatatgaattggaggtcatcagtaaaaatttgcgtcatttgaacataatcgactgtggctctcaagaac |
417 |
Q |
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| T |
38285790 |
gaggacgtcaccttgaagaactacaacctcatatatgaattggaggtcatcagtaaaaatttgcgtcatttgaacataatcgactgtggctctcaagaac |
38285691 |
T |
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| Q |
418 |
aatactctcctcccataagtatcgatgcagccaacctcttat |
459 |
Q |
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| T |
38285690 |
aatactctcctcccataagtatcgatgcagccaacctcttat |
38285649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 118 - 250
Target Start/End: Complemental strand, 38172948 - 38172816
Alignment:
| Q |
118 |
attcttgtactggtactgaagtacacacaatgaacatcaaggctcatatgttatccaagtttagcttcaccggcaacagaatctatcaacttgtggggtt |
217 |
Q |
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| T |
38172948 |
attcttgtaatggtcgtgaagtacactcaatgaacattaaggctgatatgttatccaagtttagctacagaggtagagaaatttctcaacatattgggtt |
38172849 |
T |
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| Q |
218 |
ttctggaatgaaaaatgtgacaacaattgtgtt |
250 |
Q |
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| T |
38172848 |
ttctggattaaaaaatgtgacaacaattgtgtt |
38172816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 38157299 - 38157251
Alignment:
| Q |
291 |
cttttgttttctgtgtgtctccaactcgaggacgtcaccttgaagaact |
339 |
Q |
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| T |
38157299 |
cttttgttttctgaatgtctccaactcgaggatgtcacctttaagaact |
38157251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 331
Target Start/End: Complemental strand, 38187409 - 38187369
Alignment:
| Q |
291 |
cttttgttttctgtgtgtctccaactcgaggacgtcacctt |
331 |
Q |
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| T |
38187409 |
cttttgttttctgaatgtctccaactcgaggacgtcacctt |
38187369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 253
Target Start/End: Complemental strand, 35083153 - 35083036
Alignment:
| Q |
136 |
aagtacacacaatgaacatcaaggctcatatgttatccaagtttagcttcaccggcaacagaatctatcaacttgtggggttttctggaatgaaaaatgt |
235 |
Q |
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| T |
35083153 |
aagtacacccaatcaacattcaagctcatatgttatccaagtttagctttagaggtattgaattttttaaacctgttgggttttctggattgaaaaacgt |
35083054 |
T |
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| Q |
236 |
gacaacaattgtgttgga |
253 |
Q |
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| T |
35083053 |
aacaacaattgtgttgga |
35083036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 293 - 337
Target Start/End: Complemental strand, 38172773 - 38172729
Alignment:
| Q |
293 |
tttgttttctgtgtgtctccaactcgaggacgtcaccttgaagaa |
337 |
Q |
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| T |
38172773 |
tttgttttctgaatgtctccaacttgaggacgtcacctttaagaa |
38172729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 223; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 118 - 456
Target Start/End: Complemental strand, 2223396 - 2223058
Alignment:
| Q |
118 |
attcttgtactggtactgaagtacacacaatgaacatcaaggctcatatgttatccaagtttagcttcaccggcaacagaatctatcaacttgtggggtt |
217 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||| || ||||||||| |
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| T |
2223396 |
attcttgtaccagtactgaagtacacacaatgaacatcaaggctcatatgttatccaagtttagcttcaccggcagcaaattctatgaatgtgtggggtt |
2223297 |
T |
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| Q |
218 |
ttctggaatgaaaaatgtgacaacaattgtgttggacggtgtcggtgaatgtatatctagtaaattagtgtcacttttgttttctgtgtgtctccaactc |
317 |
Q |
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| T |
2223296 |
ttctggaatgaaaaatgtgacaacaattgtgttggacggtgtccatgaatgtatatctggtaaattagtgccacttctgttttctgggtgtctccaactc |
2223197 |
T |
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| Q |
318 |
gaggacgtcaccttgaagaactacaacctcatatatgaattggaggtcatcagtaaaaatttgcgtcatttgaacataatcgactgtggctctcaagaac |
417 |
Q |
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| T |
2223196 |
gaggacgttacctttaagaactacaacctcataagtgaactggtggttatcagtacaaagttgcgtcatttgaacataatcaattgtggctctcaagaac |
2223097 |
T |
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| Q |
418 |
aatactctcctcccataagtatcgatgcagccaacctct |
456 |
Q |
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|||| |||||||||||||||||||| ||| |||||||| |
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| T |
2223096 |
aatattctcctcccataagtatcgacgcaatcaacctct |
2223058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 289 - 405
Target Start/End: Complemental strand, 12409285 - 12409169
Alignment:
| Q |
289 |
cacttttgttttctgtgtgtctccaactcgaggacgtcaccttgaagaactacaacctcatatatgaattggaggtcatcagtaaaaatttgcgtcattt |
388 |
Q |
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||||||||||||||| | ||||||||| |||||||||||||| ||||||| || | ||| || |||||||| | |||||| ||| |||||||||| |
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| T |
12409285 |
cacttttgttttctgaatatctccaacttgaggacgtcacctttaagaactgcagcatcacatgggaattggaaattatcagtccaaagctgcgtcattt |
12409186 |
T |
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| Q |
389 |
gaacataatcgactgtg |
405 |
Q |
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| T |
12409185 |
gaacataatcgactgtg |
12409169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 289 - 405
Target Start/End: Complemental strand, 12421345 - 12421229
Alignment:
| Q |
289 |
cacttttgttttctgtgtgtctccaactcgaggacgtcaccttgaagaactacaacctcatatatgaattggaggtcatcagtaaaaatttgcgtcattt |
388 |
Q |
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||||||||||||||| | ||||||||| |||||||||||||| ||||||| || | ||| || |||||||| | |||||| ||| |||||||||| |
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| T |
12421345 |
cacttttgttttctgaatatctccaacttgaggacgtcacctttaagaactgcagcatcacatgggaattggaaattatcagtccaaagctgcgtcattt |
12421246 |
T |
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| Q |
389 |
gaacataatcgactgtg |
405 |
Q |
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| T |
12421245 |
gaacataatcgactgtg |
12421229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 190
Target Start/End: Complemental strand, 4163944 - 4163890
Alignment:
| Q |
136 |
aagtacacacaatgaacatcaaggctcatatgttatccaagtttagcttcaccgg |
190 |
Q |
| |
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|||||||| |||| || || ||||||||||||| |||||||||||||||||||| |
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| T |
4163944 |
aagtacacccaataaaaattgaggctcatatgttgtccaagtttagcttcaccgg |
4163890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 190
Target Start/End: Complemental strand, 4225565 - 4225511
Alignment:
| Q |
136 |
aagtacacacaatgaacatcaaggctcatatgttatccaagtttagcttcaccgg |
190 |
Q |
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|||||||| |||| || || ||||||||||||| |||||||||||||||||||| |
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| T |
4225565 |
aagtacacccaataaaaattgaggctcatatgttgtccaagtttagcttcaccgg |
4225511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 9664060 - 9664108
Alignment:
| Q |
136 |
aagtacacacaatgaacatcaaggctcatatgttatccaagtttagctt |
184 |
Q |
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|||||||| |||| ||||| | |||||||||||||||||||||||||| |
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| T |
9664060 |
aagtacacccaatcaacattcaagctcatatgttatccaagtttagctt |
9664108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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