View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5178-Insertion-4 (Length: 159)

Name: NF5178-Insertion-4
Description: NF5178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5178-Insertion-4
NF5178-Insertion-4
[»] chr2 (3 HSPs)
chr2 (8-97)||(45043152-45043241)
chr2 (41-95)||(1748189-1748243)
chr2 (115-159)||(45043086-45043129)
[»] chr1 (3 HSPs)
chr1 (41-95)||(25030442-25030496)
chr1 (41-95)||(9246814-9246868)
chr1 (43-95)||(45807205-45807257)
[»] chr7 (3 HSPs)
chr7 (41-95)||(4248832-4248886)
chr7 (53-97)||(14629577-14629621)
chr7 (46-97)||(6429038-6429089)
[»] chr5 (2 HSPs)
chr5 (41-95)||(20117666-20117720)
chr5 (41-97)||(38705473-38705529)
[»] chr4 (1 HSPs)
chr4 (41-83)||(9046010-9046052)
[»] chr6 (1 HSPs)
chr6 (54-95)||(1398033-1398074)


Alignment Details
Target: chr2 (Bit Score: 70; Significance: 7e-32; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 7e-32
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 45043241 - 45043152
Alignment:
Q  8 gtaacaaaaatcatgtgcatcactttgttggggtttgaaaccgccgaaaactaaaaccgttaaaaaattatttaaactcttgcaaaatgg 97  Q
    ||||||||||||| ||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||    
T  45043241 gtaacaaaaatcaagtgcatcactttgttagggtttgaaactgccgaaaattaaaaccgttaaaaaattatttaaactcttgcaagatgg 45043152  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 1748243 - 1748189
Alignment:
Q  41 tttgaaaccgccgaaaactaaaaccgttaaaaaattatttaaactcttgcaaaat 95  Q
    |||||||||||  ||||||||||| ||| |||||||||||||| |||||||||||    
T  1748243 tttgaaaccgcaaaaaactaaaacagttgaaaaattatttaaagtcttgcaaaat 1748189  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 159
Target Start/End: Complemental strand, 45043129 - 45043086
Alignment:
Q  115 acccaccccggtccataaggagccccaccactgccaccatggata 159  Q
    |||||||| |||||||||||||| ||| |||||||||||||||||    
T  45043129 acccaccc-ggtccataaggagctccatcactgccaccatggata 45043086  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 25030496 - 25030442
Alignment:
Q  41 tttgaaaccgccgaaaactaaaaccgttaaaaaattatttaaactcttgcaaaat 95  Q
    ||||||| ||| |||||||| |||||||||||||||||||||| |||| ||||||    
T  25030496 tttgaaagcgcggaaaactataaccgttaaaaaattatttaaagtcttccaaaat 25030442  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 9246814 - 9246868
Alignment:
Q  41 tttgaaaccgccgaaaactaaaaccgttaaaaaattatttaaactcttgcaaaat 95  Q
    ||||||||||| |||||||| ||||||| ||||| | |||||| |||||||||||    
T  9246814 tttgaaaccgcggaaaactataaccgttgaaaaaatgtttaaagtcttgcaaaat 9246868  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 45807257 - 45807205
Alignment:
Q  43 tgaaaccgccgaaaactaaaaccgttaaaaaattatttaaactcttgcaaaat 95  Q
    ||||||||||||||  |||||||||| ||||||| |||||| |||| ||||||    
T  45807257 tgaaaccgccgaaatttaaaaccgttgaaaaattgtttaaaatcttacaaaat 45807205  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 4248832 - 4248886
Alignment:
Q  41 tttgaaaccgccgaaaactaaaaccgttaaaaaattatttaaactcttgcaaaat 95  Q
    ||||||||||||||||||||||||||||  |  ||| |||||| |||||||||||    
T  4248832 tttgaaaccgccgaaaactaaaaccgttggaggattgtttaaagtcttgcaaaat 4248886  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 97
Target Start/End: Original strand, 14629577 - 14629621
Alignment:
Q  53 gaaaactaaaaccgttaaaaaattatttaaactcttgcaaaatgg 97  Q
    |||||||||||||||| ||||||| || ||| |||||||||||||    
T  14629577 gaaaactaaaaccgttgaaaaattgttgaaaatcttgcaaaatgg 14629621  T

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Target: chr7; HSP #3
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 6429038 - 6429089
Alignment:
Q  46 aaccgccgaaaactaaaaccgttaaaaaattatttaaactcttgcaaaatgg 97  Q
    ||||||| ||||||||||||| |  |||||| |||||||||| |||||||||    
T  6429038 aaccgccaaaaactaaaaccgctgcaaaattgtttaaactctcgcaaaatgg 6429089  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 20117720 - 20117666
Alignment:
Q  41 tttgaaaccgccgaaaactaaaaccgttaaaaaattatttaaactcttgcaaaat 95  Q
    ||||||||||||||||||||||| |||| |||| || |||||| ||| |||||||    
T  20117720 tttgaaaccgccgaaaactaaaatcgttgaaaagttgtttaaagtctcgcaaaat 20117666  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 38705473 - 38705529
Alignment:
Q  41 tttgaaaccgccgaaaactaaaaccgttaaaaaattatttaaactcttgcaaaatgg 97  Q
    |||| ||||| |||||| ||||| |||| ||||||| |||||| |||||||||||||    
T  38705473 tttggaaccgtcgaaaattaaaaacgttgaaaaattgtttaaaatcttgcaaaatgg 38705529  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 83
Target Start/End: Original strand, 9046010 - 9046052
Alignment:
Q  41 tttgaaaccgccgaaaactaaaaccgttaaaaaattatttaaa 83  Q
    ||||||||||||||||||||||| | || ||||||||||||||    
T  9046010 tttgaaaccgccgaaaactaaaatcattgaaaaattatttaaa 9046052  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 95
Target Start/End: Original strand, 1398033 - 1398074
Alignment:
Q  54 aaaactaaaaccgttaaaaaattatttaaactcttgcaaaat 95  Q
    ||||||| ||||||||||||||||||||||| || |||||||    
T  1398033 aaaactataaccgttaaaaaattatttaaacactcgcaaaat 1398074  T

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