View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5178_high_3 (Length: 353)

Name: NF5178_high_3
Description: NF5178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5178_high_3
NF5178_high_3
[»] chr4 (4 HSPs)
chr4 (3-341)||(48951026-48951364)
chr4 (145-265)||(48912479-48912599)
chr4 (162-257)||(48958086-48958181)
chr4 (187-265)||(48974085-48974163)
[»] scaffold0536 (3 HSPs)
scaffold0536 (5-305)||(1547-1847)
scaffold0536 (187-272)||(6638-6723)
scaffold0536 (161-308)||(10584-10731)
[»] chr6 (2 HSPs)
chr6 (162-265)||(12483601-12483704)
chr6 (162-311)||(12590260-12590409)
[»] chr8 (1 HSPs)
chr8 (162-272)||(12641608-12641718)
[»] chr2 (1 HSPs)
chr2 (196-272)||(13448339-13448415)


Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 3 - 341
Target Start/End: Original strand, 48951026 - 48951364
Alignment:
Q  3 acgaacaacatctttagcaatttttgctaactcttgggctttgtttctaatttggacagcttcatcacccccatccatcaaccttctcatagccttcttt 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48951026 acgaacaacatctttagcaatttttgctaactcttgggctttgtttctaatttggacagcttcatcacccccatccatcaaccttctcatagccttcttt 48951125  T
Q  103 ataaaatctctcttcaccaactttttcatatctcgaaaagctgttgtgatccattcatctgcacctacttccactcctatcccacgcacatgagttatga 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  48951126 ataaaatctctcttcaccaactttttcatatctcgaaaagctgttgtgatccactcatctgcacctacttccactcctatcccacgcacatgagttatga 48951225  T
Q  203 gcttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccctacactaatagcctccgtcacagagttccacccacaatgtgtcaa 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48951226 gcttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccctacactaatagcctccgtcacagagttccacccacaatgtgtcaa 48951325  T
Q  303 aaacgcgccaacagcaggatgccctaatataaccatctg 341  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  48951326 aaacgcgccaacggcaggatgccctaatataaccatctg 48951364  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 145 - 265
Target Start/End: Complemental strand, 48912599 - 48912479
Alignment:
Q  145 gttgtgatccattcatctgcacctacttccactcctatcccacgcacatgagttatgagcttctcattgtagaactgatcactatgcaccggccacgtga 244  Q
    |||||| |||||||   |||||| || ||||| || |||||| |||| || ||||| | |||||||||||| ||||| || | ||||| |||||||||||    
T  48912599 gttgtgctccattccgttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaactgttctccatgcatcggccacgtga 48912500  T
Q  245 tcatcggaacccctacactaa 265  Q
    |||| ||||||||| ||||||    
T  48912499 tcattggaacccctgcactaa 48912479  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 257
Target Start/End: Original strand, 48958086 - 48958181
Alignment:
Q  162 tgcacctacttccactcctatcccacgcacatgagttatgagcttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccc 257  Q
    |||||| || ||||| || || || ||||||| |||||| | ||||||||||||||| || || | ||||||||||||||||||||| ||||||||    
T  48958086 tgcaccaacctccaccccaattcctcgcacattagttatcaacttctcattgtagaattgttctccatgcaccggccacgtgatcattggaacccc 48958181  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 265
Target Start/End: Original strand, 48974085 - 48974163
Alignment:
Q  187 cgcacatgagttatgagcttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccctacactaa 265  Q
    ||||| |||||||| | |||||| |||||||| || ||   |||||| |||||||||||||| ||||||||| ||||||    
T  48974085 cgcacctgagttatcaacttctcgttgtagaattgttcgtcatgcactggccacgtgatcattggaacccctgcactaa 48974163  T

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Target: scaffold0536 (Bit Score: 69; Significance: 7e-31; HSPs: 3)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 5 - 305
Target Start/End: Complemental strand, 1847 - 1547
Alignment:
Q  5 gaacaacatctttagcaatttttgctaactcttgggctttgtttctaatttggacagcttcatcacccccatccatcaaccttctcatagccttctttat 104  Q
    ||||||||| |||||| |||||||| | |||||| ||| |   ||| ||||| |  ||||||||||| |  ||||||||||| || | ||||||||||||    
T  1847 gaacaacatgtttagctatttttgcaatctcttgagctctacgtcttatttgaatggcttcatcaccactgtccatcaacctccttaaagccttctttat 1748  T
Q  105 aaaatctctcttcaccaactttttcatatctcgaaaagctgttgtgatccattcatctgcacctacttccactcctatcccacgcacatgagttatgagc 204  Q
    |  |||||||   |  | ||||| ||| || ||||||||  | || | ||| ||||||||||| ||||||||||| |||||| |||| |||||||| | |    
T  1747 acgatctctccctattagcttttccatgtcccgaaaagcaatggtaagccactcatctgcaccgacttccactccaatcccatgcacctgagttatcaac 1648  T
Q  205 ttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccctacactaatagcctccgtcacagagttccacccacaatgtgtcaaaa 304  Q
     | || || ||||| ||||||||||| || ||||| |||||||| ||||  ||| |||||| |||||| || | ||||||||||||||||||||||||||    
T  1647 gtttcgttatagaattgatcactatgtactggccatgtgatcattggaattcctgcactaacagcctcggttatagagttccacccacaatgtgtcaaaa 1548  T
Q  305 a 305  Q
    |    
T  1547 a 1547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 6723 - 6638
Alignment:
Q  187 cgcacatgagttatgagcttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccctacactaatagcctc 272  Q
    ||||| || ||||| | ||| |||||||| || || || | ||||||||||||||||||||||||||||||| |||||| ||||||    
T  6723 cgcacctgtgttatcaacttttcattgtaaaattgttctccatgcaccggccacgtgatcatcggaacccctgcactaacagcctc 6638  T

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Target: scaffold0536; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 308
Target Start/End: Complemental strand, 10731 - 10584
Alignment:
Q  161 ctgcacctacttccactcctatcccacgcacatgagttatgagcttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccctac 260  Q
    ||||||| |||||| | || ||||| ||||| || ||||| | |||||||||||| || || || | |||||  |||||||||||||| ||||||||| |    
T  10731 ctgcacccacttcccccccaatcccccgcacttgcgttatcaacttctcattgtaaaattgttctccatgcattggccacgtgatcattggaacccctgc 10632  T
Q  261 actaatagcctccgtcacagagttccacccacaatgtgtcaaaaacgc 308  Q
    |||||  ||||||      || ||||||||||||||||||| ||||||    
T  10631 actaaccgcctccacggtggaattccacccacaatgtgtcataaacgc 10584  T

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Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 162 - 265
Target Start/End: Complemental strand, 12483704 - 12483601
Alignment:
Q  162 tgcacctacttccactcctatcccacgcacatgagttatgagcttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccctaca 261  Q
    |||||| |||||||| || ||||| ||||||| ||||||||| ||||||||||| || || ||||  || ||||||||||||||||| |||| |||| ||    
T  12483704 tgcaccgacttccacaccaatccctcgcacattagttatgagtttctcattgtaaaaatgttcaccgtgaaccggccacgtgatcattggaatccctgca 12483605  T
Q  262 ctaa 265  Q
    ||||    
T  12483604 ctaa 12483601  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 311
Target Start/End: Complemental strand, 12590409 - 12590260
Alignment:
Q  162 tgcacctacttccactcctatcccacgcacatgagttatgagcttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccctaca 261  Q
    |||||| ||||||||||| || ||| |||||| |||||| | |||||||||||| || || |||| || ||  ||||| |||||||||||||  ||  ||    
T  12590409 tgcaccaacttccactccaattccatgcacatcagttatcaacttctcattgtaaaaatgttcaccattcaatggccatgtgatcatcggaattccagca 12590310  T
Q  262 ctaatagcctccgtcacagagttccacccacaatgtgtcaaaaacgcgcc 311  Q
    ||||  ||||||   || || ||||| ||||||||||||| |||||||||    
T  12590309 ctaaccgcctccacgacggaattccatccacaatgtgtcataaacgcgcc 12590260  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 272
Target Start/End: Complemental strand, 12641718 - 12641608
Alignment:
Q  162 tgcacctacttccactcctatcccacgcacatgagttatgagcttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccctaca 261  Q
    |||||| || ||||| || ||||  ||||||  |||||| ||||||||||| |||||||| || |  ||||| |||||||||||||| |||| |||| ||    
T  12641718 tgcacccacctccaccccaatccttcgcacaacagttatcagcttctcattatagaactgttctccttgcactggccacgtgatcattggaatccctgca 12641619  T
Q  262 ctaatagcctc 272  Q
    |||| ||||||    
T  12641618 ctaacagcctc 12641608  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 272
Target Start/End: Original strand, 13448339 - 13448415
Alignment:
Q  196 gttatgagcttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccctacactaatagcctc 272  Q
    ||||| || |||||||||||||| ||||| | ||| ||||||||||| ||||| ||||| ||  |||||| ||||||    
T  13448339 gttatcagtttctcattgtagaattgatctccatgaaccggccacgttatcattggaactcccgcactaacagcctc 13448415  T

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