View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5179-Insertion-4 (Length: 751)
Name: NF5179-Insertion-4
Description: NF5179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5179-Insertion-4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 663; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 663; E-Value: 0
Query Start/End: Original strand, 7 - 751
Target Start/End: Original strand, 49583867 - 49584607
Alignment:
| Q |
7 |
aagtcttacaaatatcagagatggtgtggatgtagggaaggcaaaagcaagaaatgcaacttagggcataaaattttcactgaatcaaggcaacgtgagc |
106 |
Q |
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| T |
49583867 |
aagtcttacaaatatcagagatggtgtggatgtagggaagggaaaagcaagaaatgcaacttagggcataaaattttcactgaatcaaggcaacgtgagc |
49583966 |
T |
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| Q |
107 |
ttttgtttcgtctgatgccgaatgtaccggaggaagttcaaaatgaattacttgaggtaatgacataaacaatttcaaagtttttcattttaatatcgat |
206 |
Q |
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| T |
49583967 |
ttttgtttcgtctgataccgaatgtaccggaggaagttcaaaatgaattacttgaggtaatgacataaacaatttcaaagtttttcattttaatatcgat |
49584066 |
T |
|
| Q |
207 |
tgttactccgtccactgtcatggattggatctatacttattgatttgtcttccatacttattatttgctatgttcaattgattggtaggtgtcagagaca |
306 |
Q |
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| T |
49584067 |
tgttactccgtccattgtcatggattggatctatacttattgatttgtcttccatacttatt----gctatgttcaattgattggtaggtgtcagagaca |
49584162 |
T |
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| Q |
307 |
cttgcagaaaggaacattagtccagaagattatttttcgactctgaaaaatttaattgggctcaaagcccttgttgatggattagcaatcggtaaaggnn |
406 |
Q |
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| T |
49584163 |
cttgcagagaggaacattagtccagaagattatttttcgactctgaaaaatttaattgggctcaaagcccttgttgatggattagcaatcggtaaaggaa |
49584262 |
T |
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| Q |
407 |
nnnnngatcttatatgcccccatgttgatgatgtaaaatccaatgaagttgttctggtcggtccttcaaaaataccgaagggaaaagcttgtgtaatgct |
506 |
Q |
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| T |
49584263 |
aaaaagatcttatatgcccccatgttgatgatgtaaaatccaatgaagctgttctggtcggtccttcaaaaataccgaagggaaaagcttgtgcaatgct |
49584362 |
T |
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| Q |
507 |
tgaaccctcagaaatgataagctttctgacaggaaatttcagattaagtaaatctcgaactgatgatctctttcgggaagccgtttggcctcgtctactt |
606 |
Q |
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| T |
49584363 |
tgaaccctcagaaataataagctttctgacaggaaacttcagattaagtaaatctcgaactgatgatctcttttgggaagccgtttggcctcgtctactt |
49584462 |
T |
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| Q |
607 |
gcaagaggttggcactcggaggaacctagatgttataattatgttccttgtaagaattctatggtcttccttgtccctcgagttaaacagttttcgagga |
706 |
Q |
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| T |
49584463 |
gcaagaggttggcactcggaggaacctagatgttataattatgttccttgtaagaattctatggtcttccttgtcccccgagttaaacagttttcaagga |
49584562 |
T |
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| Q |
707 |
atctgctgaagggggtacaatatttcgattctccgtttgaaatcc |
751 |
Q |
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| T |
49584563 |
atctgctgaagggggtacaatatttcgattctccgtttgaaatcc |
49584607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 569 - 632
Target Start/End: Complemental strand, 15769610 - 15769547
Alignment:
| Q |
569 |
atgatctctttcgggaagccgtttggcctcgtctacttgcaagaggttggcactcggaggaacc |
632 |
Q |
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| T |
15769610 |
atgatctcttctgggaagctgtttggcctcgcttactggcaagaggttggcactctgagcaacc |
15769547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 571 - 632
Target Start/End: Complemental strand, 46643193 - 46643132
Alignment:
| Q |
571 |
gatctctttcgggaagccgtttggcctcgtctacttgcaagaggttggcactcggaggaacc |
632 |
Q |
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| T |
46643193 |
gatctcttctgggaagctgtttggcctcgattactggcaagaggttggcactctgagcaacc |
46643132 |
T |
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