View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5179-Insertion-5 (Length: 609)

Name: NF5179-Insertion-5
Description: NF5179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5179-Insertion-5
NF5179-Insertion-5
[»] chr3 (3 HSPs)
chr3 (337-379)||(46910523-46910565)
chr3 (235-264)||(9588732-9588761)
chr3 (235-264)||(21959751-21959780)
[»] chr8 (2 HSPs)
chr8 (235-267)||(25400459-25400491)
chr8 (235-267)||(25496638-25496670)
[»] chr2 (2 HSPs)
chr2 (337-405)||(27892856-27892924)
chr2 (337-377)||(24189996-24190036)
[»] chr4 (1 HSPs)
chr4 (235-264)||(37371475-37371504)


Alignment Details
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 379
Target Start/End: Complemental strand, 46910565 - 46910523
Alignment:
Q  337 aagaccatccccaatttgccacactatatttctttaaaactcc 379  Q
    ||||||||||||||||| ||||||||||||||||| |||||||    
T  46910565 aagaccatccccaattttccacactatatttctttgaaactcc 46910523  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 264
Target Start/End: Original strand, 9588732 - 9588761
Alignment:
Q  235 agggtatgatttatcaattataccctttgt 264  Q
    ||||||||||||||||||||||||||||||    
T  9588732 agggtatgatttatcaattataccctttgt 9588761  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 264
Target Start/End: Complemental strand, 21959780 - 21959751
Alignment:
Q  235 agggtatgatttatcaattataccctttgt 264  Q
    ||||||||||||||||||||||||||||||    
T  21959780 agggtatgatttatcaattataccctttgt 21959751  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 235 - 267
Target Start/End: Original strand, 25400459 - 25400491
Alignment:
Q  235 agggtatgatttatcaattataccctttgttaa 267  Q
    |||||||||||||||||||||||||||||||||    
T  25400459 agggtatgatttatcaattataccctttgttaa 25400491  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 235 - 267
Target Start/End: Original strand, 25496638 - 25496670
Alignment:
Q  235 agggtatgatttatcaattataccctttgttaa 267  Q
    |||||||||||||||||||||||||||||||||    
T  25496638 agggtatgatttatcaattataccctttgttaa 25496670  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 337 - 405
Target Start/End: Original strand, 27892856 - 27892924
Alignment:
Q  337 aagaccatccccaatttgccacactatatttctttaaaactcctcccagcatagcaagggctttccaca 405  Q
    ||||||||| |||||||| |||||||||||| ||| ||||||| |    ||||||||||||||||||||    
T  27892856 aagaccatctccaatttgtcacactatatttttttgaaactcccctgctcatagcaagggctttccaca 27892924  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 337 - 377
Target Start/End: Complemental strand, 24190036 - 24189996
Alignment:
Q  337 aagaccatccccaatttgccacactatatttctttaaaact 377  Q
    |||||||||| |||||||||| ||||||||||||| |||||    
T  24190036 aagaccatcctcaatttgccaaactatatttctttgaaact 24189996  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 264
Target Start/End: Complemental strand, 37371504 - 37371475
Alignment:
Q  235 agggtatgatttatcaattataccctttgt 264  Q
    ||||||||||||||||||||||||||||||    
T  37371504 agggtatgatttatcaattataccctttgt 37371475  T

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