View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5179-Insertion-6 (Length: 488)

Name: NF5179-Insertion-6
Description: NF5179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5179-Insertion-6
NF5179-Insertion-6
[»] chr3 (4 HSPs)
chr3 (6-488)||(8167152-8167637)
chr3 (19-137)||(8141988-8142106)
chr3 (317-376)||(47190195-47190254)
chr3 (310-362)||(26609804-26609856)
[»] chr1 (4 HSPs)
chr1 (310-376)||(23802600-23802666)
chr1 (310-366)||(5346047-5346103)
chr1 (318-362)||(6886598-6886642)
chr1 (310-371)||(3889959-3890022)
[»] chr2 (6 HSPs)
chr2 (317-374)||(8686897-8686954)
chr2 (312-362)||(14433839-14433889)
chr2 (317-366)||(1001389-1001438)
chr2 (311-365)||(11814069-11814123)
chr2 (310-362)||(16389473-16389525)
chr2 (322-362)||(32484074-32484114)
[»] chr4 (5 HSPs)
chr4 (310-376)||(12141772-12141838)
chr4 (310-366)||(45036773-45036829)
chr4 (323-376)||(4341976-4342029)
chr4 (310-366)||(789789-789845)
chr4 (310-366)||(55264895-55264951)
[»] chr7 (1 HSPs)
chr7 (317-362)||(31311984-31312029)
[»] chr5 (2 HSPs)
chr5 (317-366)||(15925891-15925940)
chr5 (317-358)||(7471468-7471509)
[»] chr8 (1 HSPs)
chr8 (320-362)||(38753448-38753490)
[»] chr6 (1 HSPs)
chr6 (310-376)||(22719346-22719412)


Alignment Details
Target: chr3 (Bit Score: 380; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 6 - 488
Target Start/End: Original strand, 8167152 - 8167637
Alignment:
Q  6 cattggtcaatcaaggaatgactcaataccagtcaacgtagcccgtaaagatggtattaggatcagataccatgatagccatctcaagttcctccttcaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8167152 cattggtcaatcaaggaatgactcaataccagtcaacgtagcccgtaaagatggtattaggatcagataccatgatagccatctcaagttcctccttcaa 8167251  T
Q  106 gcaataaagtatgaactaatcaatttcatttttcttgcaaagagtaatagatttaagagtatgctctagatttacaagttttcctaattctatttcacta 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  8167252 gcaataaagtatgaactaatcaatttcatttttcttgcaaagagtaatagatttaagagtatgctctagatttacaagtttccctaattctatttcacta 8167351  T
Q  206 tattattatttctccatttatttcctcnnnnnnntatcttaataaacactattattataaactcaattttttgttggttagattagtgtaattagcatgc 305  Q
    |||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  8167352 tattattatttctccatttatttcctcaaaaaaatatcttaataaacactattattataaactcaattttttgttggttagattagtgtaattagcatgt 8167451  T
Q  306 tcgaccgagatgtcacttggttgagagattctctcttcaacctcgagatactcggttcgagtcccagcacctgagcatgttcgacaagatttcctcgtag 405  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| | ||||||||||| |||||| | || ||||    
T  8167452 tcgactgagaggtcacttggttgagagattctctcttcaacctcgagatacacggttcgagtccccgcagccgagcatgttcg-caagatatacttgtag 8167550  T
Q  406 attag---ctttgaacctgttaattatcagattaattctcgagtaggcagcaaaatattaggg-ttttattaatgattgttggacta 488  Q
    |||||   |||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  8167551 attagactctttgaacctcttaattatgagattaattctcgagtaggcagcaaaatattagggttttttttaatgattgttggacta 8167637  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 137
Target Start/End: Original strand, 8141988 - 8142106
Alignment:
Q  19 aggaatgactcaataccagtcaacgtagcccgtaaagatggtattaggatcagataccatgatagccatctcaagttcctccttcaagcaataaagtatg 118  Q
    |||||||||||| | ||| |||| ||||| |||||||||||| ||||||| | ||||||| ||  ||||||| | | ||||||| ||| |||||||||||    
T  8141988 aggaatgactcagttccaatcaatgtagctcgtaaagatggtgttaggattaaataccatcatgaccatctctactacctccttgaaggaataaagtatg 8142087  T
Q  119 aactaatcaatttcatttt 137  Q
    |  ||| ||||||| ||||    
T  8142088 agttaaacaatttcttttt 8142106  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 317 - 376
Target Start/End: Original strand, 47190195 - 47190254
Alignment:
Q  317 gtcacttggttgagagattctctcttcaacctcgagatactcggttcgagtcccagcacc 376  Q
    |||| ||||||||||| |||||||||||||||||||| ||||||||| | |||| |||||    
T  47190195 gtcatttggttgagagtttctctcttcaacctcgagaaactcggttcaaatcccggcacc 47190254  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 310 - 362
Target Start/End: Original strand, 26609804 - 26609856
Alignment:
Q  310 ccgagatgtcacttggttgagagattctctcttcaacctcgagatactcggtt 362  Q
    |||||| |||||| ||||||||| |||||||||||| || |||| ||||||||    
T  26609804 ccgagaagtcactaggttgagagtttctctcttcaatcttgagaaactcggtt 26609856  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 310 - 376
Target Start/End: Complemental strand, 23802666 - 23802600
Alignment:
Q  310 ccgagatgtcacttggttgagagattctctcttcaacctcgagatactcggttcgagtcccagcacc 376  Q
    |||||| |||||||||||||||| |||||||||||||||||||| |||||||||||| ||| |||||    
T  23802666 ccgagaagtcacttggttgagagtttctctcttcaacctcgagaaactcggttcgagacccggcacc 23802600  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 366
Target Start/End: Complemental strand, 5346103 - 5346047
Alignment:
Q  310 ccgagatgtcacttggttgagagattctctcttcaacctcgagatactcggttcgag 366  Q
    |||||| |||||||||||||||| ||||||||||||| | |||  ||||||||||||    
T  5346103 ccgagaagtcacttggttgagagtttctctcttcaactttgaggaactcggttcgag 5346047  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 362
Target Start/End: Original strand, 6886598 - 6886642
Alignment:
Q  318 tcacttggttgagagattctctcttcaacctcgagatactcggtt 362  Q
    |||||||||||| || |||||||||||||||||||| ||||||||    
T  6886598 tcacttggttgaaagtttctctcttcaacctcgagaaactcggtt 6886642  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 310 - 371
Target Start/End: Complemental strand, 3890022 - 3889959
Alignment:
Q  310 ccgagatgtcacttggttgagaga--ttctctcttcaacctcgagatactcggttcgagtccca 371  Q
    |||||| || ||||||||||||||  || |||||||||||| |||| ||||||||||| |||||    
T  3890022 ccgagaagtaacttggttgagagagtttatctcttcaaccttgagaaactcggttcgaatccca 3889959  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 317 - 374
Target Start/End: Complemental strand, 8686954 - 8686897
Alignment:
Q  317 gtcacttggttgagagattctctcttcaacctcgagatactcggttcgagtcccagca 374  Q
    |||||||||||||||| ||||||||||| |||||||| |||||||||||| |||||||    
T  8686954 gtcacttggttgagagtttctctcttcatcctcgagaaactcggttcgagacccagca 8686897  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 312 - 362
Target Start/End: Original strand, 14433839 - 14433889
Alignment:
Q  312 gagatgtcacttggttgagagattctctcttcaacctcgagatactcggtt 362  Q
    |||| |||||||||||||||| |||||||||||||||||||| ||||||||    
T  14433839 gagaagtcacttggttgagagtttctctcttcaacctcgagaaactcggtt 14433889  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 317 - 366
Target Start/End: Original strand, 1001389 - 1001438
Alignment:
Q  317 gtcacttggttgagagattctctcttcaacctcgagatactcggttcgag 366  Q
    |||||||||||||||  |||||||||||||||||||| ||||||||||||    
T  1001389 gtcacttggttgagaatttctctcttcaacctcgagaaactcggttcgag 1001438  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 365
Target Start/End: Complemental strand, 11814123 - 11814069
Alignment:
Q  311 cgagatgtcacttggttgagagattctctcttcaacctcgagatactcggttcga 365  Q
    ||||| |||| ||||||||||| |||||||||||||||||||| |||| ||||||    
T  11814123 cgagaggtcatttggttgagagtttctctcttcaacctcgagaaactcagttcga 11814069  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 362
Target Start/End: Original strand, 16389473 - 16389525
Alignment:
Q  310 ccgagatgtcacttggttgagagattctctcttcaacctcgagatactcggtt 362  Q
    |||||| ||||||||||||| || |||||||||||||| ||||| ||||||||    
T  16389473 ccgagaagtcacttggttgatagtttctctcttcaaccccgagaaactcggtt 16389525  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 362
Target Start/End: Complemental strand, 32484114 - 32484074
Alignment:
Q  322 ttggttgagagattctctcttcaacctcgagatactcggtt 362  Q
    ||||||||||| |||||||||||||||||||| ||||||||    
T  32484114 ttggttgagagtttctctcttcaacctcgagaaactcggtt 32484074  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 376
Target Start/End: Complemental strand, 12141838 - 12141772
Alignment:
Q  310 ccgagatgtcacttggttgagagattctctcttcaacctcgagatactcggttcgagtcccagcacc 376  Q
    |||||| || |||||||||||||  ||||||||||||||||||| |||||||| ||| ||| |||||    
T  12141838 ccgagaagttacttggttgagagtatctctcttcaacctcgagaaactcggtttgagacccggcacc 12141772  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 366
Target Start/End: Complemental strand, 45036829 - 45036773
Alignment:
Q  310 ccgagatgtcacttggttgagagattctctcttcaacctcgagatactcggttcgag 366  Q
    |||||| ||||| |||||||||| ||||||||||||||| | || ||||||||||||    
T  45036829 ccgagaagtcacatggttgagagtttctctcttcaaccttgtgaaactcggttcgag 45036773  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 376
Target Start/End: Complemental strand, 4342029 - 4341976
Alignment:
Q  323 tggttgagagattctctcttcaacctcgagatactcggttcgagtcccagcacc 376  Q
    |||||||||||  |||||||||||||||||| ||||||||| || ||| |||||    
T  4342029 tggttgagagaaactctcttcaacctcgagaaactcggttcaagacccggcacc 4341976  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 310 - 366
Target Start/End: Complemental strand, 789845 - 789789
Alignment:
Q  310 ccgagatgtcacttggttgagagattctctcttcaacctcgagatactcggttcgag 366  Q
    |||||| |||| ||||||||||| |||||| ||||| ||| ||| ||||||||||||    
T  789845 ccgagaagtcatttggttgagagtttctcttttcaatctcaagaaactcggttcgag 789789  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 310 - 366
Target Start/End: Original strand, 55264895 - 55264951
Alignment:
Q  310 ccgagatgtcacttggttgagagattctctcttcaacctcgagatactcggttcgag 366  Q
    |||||| |||| ||||||||||||  |||||||||||||| ||  ||||||||||||    
T  55264895 ccgagaagtcatttggttgagagaaactctcttcaacctcaaggaactcggttcgag 55264951  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 317 - 362
Target Start/End: Original strand, 31311984 - 31312029
Alignment:
Q  317 gtcacttggttgagagattctctcttcaacctcgagatactcggtt 362  Q
    ||||| |||||||||| |||||||||||||||||||| ||||||||    
T  31311984 gtcacatggttgagagtttctctcttcaacctcgagagactcggtt 31312029  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 317 - 366
Target Start/End: Complemental strand, 15925940 - 15925891
Alignment:
Q  317 gtcacttggttgagagattctctcttcaacctcgagatactcggttcgag 366  Q
    |||| ||||||||||||  |||||||||||||||||| ||||||||||||    
T  15925940 gtcatttggttgagagaaactctcttcaacctcgagaaactcggttcgag 15925891  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 358
Target Start/End: Original strand, 7471468 - 7471509
Alignment:
Q  317 gtcacttggttgagagattctctcttcaacctcgagatactc 358  Q
    |||||||||||||||| |||| ||||||||||||||| ||||    
T  7471468 gtcacttggttgagagtttctttcttcaacctcgagaaactc 7471509  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 362
Target Start/End: Complemental strand, 38753490 - 38753448
Alignment:
Q  320 acttggttgagagattctctcttcaacctcgagatactcggtt 362  Q
    |||||||||||||  |||||||||||||| |||||||||||||    
T  38753490 acttggttgagagtatctctcttcaaccttgagatactcggtt 38753448  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 376
Target Start/End: Original strand, 22719346 - 22719412
Alignment:
Q  310 ccgagatgtcacttggttgagagattctctcttcaacctcgagatactcggttcgagtcccagcacc 376  Q
    |||||| |||||||||||||||| |||||| ||||||||  ||| | | |||||||| |||||||||    
T  22719346 ccgagaagtcacttggttgagagtttctcttttcaacctgaagaaagttggttcgagacccagcacc 22719412  T

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