View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5179-Insertion-8 (Length: 317)

Name: NF5179-Insertion-8
Description: NF5179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5179-Insertion-8
NF5179-Insertion-8
[»] chr4 (1 HSPs)
chr4 (2-317)||(28035585-28035900)


Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 2 - 317
Target Start/End: Original strand, 28035585 - 28035900
Alignment:
Q  2 ccaacagctttaacacaaggtatgagcaaatcctcggagtcacctttttcgacaactttgagaaactgttccaccacagcttttgcagcaggggcagttg 101  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28035585 ccaatagctttaacacaaggtatgagcaaatcctcggagtcacctttttcaacaactttgagaaactgttccaccacagcttttgcagcaggggcagttg 28035684  T
Q  102 gtttgagagcagagcgtctcaattctgcatgttctgctgccacagatgttatttccatcaaagccattgctgaataatgttgcacatcatctgtaccctt 201  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28035685 gtttgaaagcagaacgtctcaattctgcatgttctgctgccacagatgttatttccatcaaagccattgctgaataatgttgcacatcatcagtaccctt 28035784  T
Q  202 ttccaacaaaaccgcgaaacacaaaagagctcttgattctgtaattgtatgacaaatagtaacatttcttctacacaattgccataaagctctagctgcc 301  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28035785 ttccaacaaaaccgcaaaacacaaaagagctcttgattctgtaattgtatgacaaatagtaacatttcttctacacaattgccataaagctctagctgcc 28035884  T
Q  302 attgctttcatttgtg 317  Q
    ||||||||||||||||    
T  28035885 attgctttcatttgtg 28035900  T

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