View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5179_high_3 (Length: 297)
Name: NF5179_high_3
Description: NF5179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5179_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 16 - 286
Target Start/End: Complemental strand, 48959109 - 48958839
Alignment:
| Q |
16 |
cattattgaggttggatcattcttgttcaacatttcttactcaaatgcacacaacaagaggcaagccttaagacaggggatgcacacaatccgtctcatc |
115 |
Q |
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| T |
48959109 |
cattattgaggttggatcattcttgttcaacatttcttactcaaatgcacacaacaagaggcaagccttaagacaggggatgcacacaatccgcctcatc |
48959010 |
T |
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| Q |
116 |
tctataattgaactcgacccgtatccatgatgtccctttaatcaaacctaaaccaagttattaaggtcgtgtctagcattgtttcatgaaagaaattaaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48959009 |
tctataattgaactcgacccgtatccatgatgtccctttaatcaaacctaaaccaagttattaaggtcgtgtctagcattgtttcatgaaagaaattaaa |
48958910 |
T |
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| Q |
216 |
acaaagttgaagtggatcatatttctttgtttgagatatagagttggagatgggtttgggttaatattcat |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
48958909 |
acaaagttgaagtggatcatatttctttgtttgagatataaagttggagatgggtttgggttaatattcat |
48958839 |
T |
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