View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5179_low_2 (Length: 423)
Name: NF5179_low_2
Description: NF5179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5179_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 244 - 390
Target Start/End: Original strand, 9869251 - 9869397
Alignment:
| Q |
244 |
aaaagataaattggttgatatattctctaaaaaaggttgacacatgaacatgtataatgtggaagatcataataatcgtatgcatcttttttaggtcatt |
343 |
Q |
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| T |
9869251 |
aaaagataaattggttgatatattctctaaaaaaggttgacacatgaacatgtataatgtggaagatcataataatcgtatgcatcttttttaggtcatt |
9869350 |
T |
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| Q |
344 |
ggagtttgtaattgttggattactctcatgatcttacaagcctttaa |
390 |
Q |
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| T |
9869351 |
ggagtttgtaattgttggattactctcatgatcttacaagcctttaa |
9869397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 12 - 189
Target Start/End: Original strand, 9869024 - 9869198
Alignment:
| Q |
12 |
atgaacttacaataattgtttgatttaccttctattatggttttacttcnnnnnnn-cttactcaactttatagtgttactaattaagattcatgtttta |
110 |
Q |
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| T |
9869024 |
atgaacttacaataattgtttgatttaccttctattatggttttactttttttttttcttactcaactttatagtgttactaa----gattcatgtttta |
9869119 |
T |
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| Q |
111 |
caaatataattgtcttgtcccatgttatatatacatgtttgtcttccattatctccatgacttctacttttctcctttc |
189 |
Q |
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| T |
9869120 |
caaatataattgtcttgtcccatgttatatatacatgtttgtcttccattatctccatgacttctacttttctcctttc |
9869198 |
T |
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