View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5179_low_3 (Length: 418)
Name: NF5179_low_3
Description: NF5179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5179_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 28677123 - 28676719
Alignment:
| Q |
1 |
actgttgtattctcacaaatttgtgagtaatctgaattgtttggctaatgtttaagtcagtcagatttagnnnnnnnnna------atacttatccaaaa |
94 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
28677123 |
actgttgtattctcacaaatttgtgagtaatctgaattgtttggctaatgtttaagtcagtcagatttagtttttttttttttattatacttatccaaaa |
28677024 |
T |
|
| Q |
95 |
gtgtgttattaatgatacagggtaaacattaatctctcgactgttgtattctttcattagagactatttgaacgtctggtttatacttatttttctttcc |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28677023 |
gtgtgttattaatgatacagggtaaacattaatctctcgacttttgtattctttcattagagactatttgaacgtctggtttatacttatttttctttcc |
28676924 |
T |
|
| Q |
195 |
ttcttaagtctctagatttcttgtaattattcctttgttatgaagtcagcatgtaagatgccattatcacttctatttagtgataaaccaaatcgttaac |
294 |
Q |
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| T |
28676923 |
ttcttaagtctctagatttcttgtaattattcctttgttatgaagtcagcatgtaagatgccattatcacttctatttagtgataaaccaaatcgttaac |
28676824 |
T |
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| Q |
295 |
aaggatctgatgcgaagtttgtaactcattaccttctcttttattgcaggaaccttctcagcccgtgcaaaatgtgatttctgtgagtactgatcccaaa |
394 |
Q |
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| T |
28676823 |
aaggatctgatgcgaagtttgtaacgcattaccttctcttttattgcaggaaccttctcagcccgtgcaaaatgtgatttctgtgagtactgatcccaaa |
28676724 |
T |
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| Q |
395 |
agtag |
399 |
Q |
| |
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||||| |
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| T |
28676723 |
agtag |
28676719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 28677245 - 28677184
Alignment:
| Q |
9 |
attctcacaaatttgtgagtaatctgaattgtttggctaatgtttaagtcagtcagatttag |
70 |
Q |
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| T |
28677245 |
attctcacaaatttgtgagtaatctgaactgtttggcaaatgtttaagtcagtcagatttag |
28677184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 214 - 399
Target Start/End: Complemental strand, 45284318 - 45284133
Alignment:
| Q |
214 |
cttgtaattattcctttgttatgaagtcagcatgtaagatgccattatcacttctatttagtgataaaccaaatcgttaacaaggatctgatgcgaagtt |
313 |
Q |
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| T |
45284318 |
cttgtaattattcctttgttatgaagtcagcatataagatgccattttcacttctatttagtgataaaccaaatcgtaaacaaggatctgatgcaaagtt |
45284219 |
T |
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| Q |
314 |
tgtaac-tcattaccttctcttttattgcaggaaccttctcagcccgtgcaaaatgtgatttctgtgagtactgatcccaaaagtag |
399 |
Q |
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| T |
45284218 |
tgtaacggcagtaccttctcttttattgcaggaaccttctcagccgatgcaaaatgtga-ttctgtgagtactgatcccaaaagtag |
45284133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 214 - 399
Target Start/End: Complemental strand, 45290779 - 45290594
Alignment:
| Q |
214 |
cttgtaattattcctttgttatgaagtcagcatgtaagatgccattatcacttctatttagtgataaaccaaatcgttaacaaggatctgatgcgaagtt |
313 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
45290779 |
cttgtaattattcctttgttatgaagtcagcatataagatgccattttcacttctatttagtgataaaccaaatcgtaaacaaggatctgatgcaaagtt |
45290680 |
T |
|
| Q |
314 |
tgtaac-tcattaccttctcttttattgcaggaaccttctcagcccgtgcaaaatgtgatttctgtgagtactgatcccaaaagtag |
399 |
Q |
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| T |
45290679 |
tgtaacggcagtaccttctcttttattgcaggaaccttctcagccgatgcaaaatgtga-ttctgtgagtactgatcccaaaagtag |
45290594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 214 - 399
Target Start/End: Complemental strand, 45291681 - 45291496
Alignment:
| Q |
214 |
cttgtaattattcctttgttatgaagtcagcatgtaagatgccattatcacttctatttagtgataaaccaaatcgttaacaaggatctgatgcgaagtt |
313 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
45291681 |
cttgtaattattcctttgttatgaagtcagcatataagatgccattttcacttctatttagtgataaaccaaatcgtaaacaaggatctgatgcaaagtt |
45291582 |
T |
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| Q |
314 |
tgtaac-tcattaccttctcttttattgcaggaaccttctcagcccgtgcaaaatgtgatttctgtgagtactgatcccaaaagtag |
399 |
Q |
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| T |
45291581 |
tgtaacggcagtaccttctcttttattgcaggaaccttctcagccgatgcaaaatgtga-ttctgtgagtactgatcccaaaagtag |
45291496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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