View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5179_low_6 (Length: 254)
Name: NF5179_low_6
Description: NF5179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5179_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 31980974 - 31980727
Alignment:
| Q |
1 |
aacgaggagatcggcaaaagcaccaagaatgaacttgtgagtattctttgggttgagagcaaggtaacaaagaagcaactcatgcaagatgttccaattt |
100 |
Q |
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| T |
31980974 |
aacgaggagatcggcaaaagcaccaagaatgaacttgtgagtattctttgggttgagagcaaggtaacaaagaagcaactcatgcaagatgttccaattt |
31980875 |
T |
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| Q |
101 |
gatttcacatccatcaactccggtcgcgcctccaccatctcttgcatcgatcttctaaaatccatataaggatcgggcgagtaggttggtactgccacac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31980874 |
gatttcacatccatcaactccggtcgcgcctccaccatctcttgcatcgatcttctaaaatccatataaggatcgggcgagtaggttggtactgccacac |
31980775 |
T |
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| Q |
201 |
ttccgttgaacaaaacctcctctttctctttctcttgtttcttctcac |
248 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31980774 |
ttccattgaacaaaacctcctctttctctttctcttgtttcttctcac |
31980727 |
T |
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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 210
Target Start/End: Original strand, 38042383 - 38042481
Alignment:
| Q |
112 |
catcaactccggtcgcgcctccaccatctcttgcatcgatcttctaaaatccatataaggatcgggcgagtaggttggtactgccacacttccgttgaa |
210 |
Q |
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| T |
38042383 |
catcaactctggttgcgcttccaccatctcttgcattgaccttcgaaaatccatgtaagggtccggtgaatatgttggcaccgccacacttccgttgaa |
38042481 |
T |
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