View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5180-Insertion-1 (Length: 1101)

Name: NF5180-Insertion-1
Description: NF5180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5180-Insertion-1
NF5180-Insertion-1
[»] chr4 (10 HSPs)
chr4 (229-430)||(34097670-34097868)
chr4 (8-187)||(34097491-34097670)
chr4 (545-624)||(34097873-34097952)
chr4 (660-729)||(19129556-19129626)
chr4 (628-716)||(49708685-49708773)
chr4 (628-674)||(52916699-52916745)
chr4 (628-701)||(24472582-24472655)
chr4 (628-676)||(45534028-45534076)
chr4 (625-676)||(24471827-24471878)
chr4 (628-691)||(55880538-55880601)
[»] chr3 (8 HSPs)
chr3 (628-826)||(32355864-32356063)
chr3 (827-943)||(32356115-32356229)
chr3 (626-683)||(23379330-23379387)
chr3 (627-726)||(44384513-44384612)
chr3 (628-676)||(42996325-42996373)
chr3 (627-672)||(10343329-10343374)
chr3 (627-675)||(53714486-53714534)
chr3 (628-674)||(50306525-50306571)
[»] scaffold1052 (3 HSPs)
scaffold1052 (627-826)||(329-528)
scaffold1052 (827-943)||(580-697)
scaffold1052 (628-701)||(1541-1614)
[»] chr2 (10 HSPs)
chr2 (628-826)||(6182092-6182290)
chr2 (827-943)||(6182342-6182456)
chr2 (627-736)||(6197914-6198023)
chr2 (627-701)||(42946444-42946518)
chr2 (628-701)||(6183090-6183163)
chr2 (628-676)||(6198903-6198951)
chr2 (625-716)||(5142514-5142605)
chr2 (941-1010)||(6182471-6182543)
chr2 (628-674)||(26021913-26021959)
chr2 (626-691)||(5504342-5504407)
[»] chr1 (13 HSPs)
chr1 (827-943)||(5101075-5101191)
chr1 (746-826)||(5100943-5101023)
chr1 (626-726)||(4530191-4530291)
chr1 (628-701)||(5101826-5101899)
chr1 (628-700)||(22425497-22425569)
chr1 (628-675)||(45597624-45597671)
chr1 (633-691)||(37689907-37689965)
chr1 (628-677)||(22862599-22862648)
chr1 (627-675)||(13536997-13537045)
chr1 (628-674)||(3788435-3788481)
chr1 (941-1010)||(5101206-5101278)
chr1 (627-676)||(4125417-4125466)
chr1 (628-677)||(22424796-22424845)
[»] chr8 (6 HSPs)
chr8 (628-736)||(510453-510561)
chr8 (628-736)||(8491468-8491576)
chr8 (628-676)||(45163117-45163165)
chr8 (633-676)||(31694167-31694210)
chr8 (627-664)||(788484-788521)
chr8 (628-701)||(35886085-35886158)
[»] chr5 (12 HSPs)
chr5 (628-691)||(6353684-6353747)
chr5 (662-716)||(326241-326295)
chr5 (627-691)||(30003551-30003615)
chr5 (657-729)||(17591331-17591404)
chr5 (657-729)||(36912939-36913012)
chr5 (626-677)||(19855060-19855111)
chr5 (628-671)||(30002864-30002907)
chr5 (657-729)||(36912274-36912344)
chr5 (628-665)||(6354696-6354733)
chr5 (657-729)||(17590593-17590666)
chr5 (628-677)||(19854336-19854385)
chr5 (628-701)||(42310849-42310922)
[»] chr7 (6 HSPs)
chr7 (628-726)||(37692844-37692942)
chr7 (628-677)||(36661685-36661734)
chr7 (693-729)||(14735422-14735458)
chr7 (628-676)||(28869774-28869822)
chr7 (662-716)||(10200129-10200183)
chr7 (657-729)||(14736117-14736190)
[»] scaffold1657 (1 HSPs)
scaffold1657 (628-724)||(909-1005)
[»] chr6 (3 HSPs)
chr6 (628-677)||(6841955-6842004)
chr6 (628-676)||(10359680-10359728)
chr6 (628-677)||(6841232-6841281)
[»] scaffold0268 (1 HSPs)
scaffold0268 (851-904)||(20445-20498)


Alignment Details
Target: chr4 (Bit Score: 180; Significance: 1e-96; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 1e-96
Query Start/End: Original strand, 229 - 430
Target Start/End: Original strand, 34097670 - 34097868
Alignment:
Q  229 aaaaatttggtacagtggaacaagaatcattgcaacaatctgaaaaaagaaatcgaggagtgtcgtaagaagttaaacccgctatcatcatgatcagggt 328  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||    
T  34097670 aaaaatttggtacaatggaacaagaatcattgcaacaatctgaaaaaagaaatcgaggagtgtcgtaagaagttaaacccgctatca---tgatcagggt 34097766  T
Q  329 gcaatacatgacgccaccttatttgatttcttgaggaagtgcatgactcgcttaattatgcaagatgttttacatgggagacaacgtgcaaaaatcattg 428  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34097767 gcaatacatgacgccaccttatttgatttcttgaggaagtgcatgactcgcttaattatgcaagatgttttatatgggagacaacgtgcaaaaatcattg 34097866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 168; E-Value: 2e-89
Query Start/End: Original strand, 8 - 187
Target Start/End: Original strand, 34097491 - 34097670
Alignment:
Q  8 gaaatgtggtttcaaattttttccaatgctaagttgctcctgcatattgtcatcatcccatcctccttgatgtttatcccattgtgaggccttgcagaac 107  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  34097491 gaaatgtggtttcaaatttttcccaatgctaagttgctcctgcatattgtcatcatcccatcctccttgatatttatcccattgtgagaccttgcagaac 34097590  T
Q  108 tcgatgtacattcaaattcaaaaacacatggtgtgtggagcctggcttgaatgatgtggttcatgccaagttgcaaagta 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34097591 tcgatgtacattcaaattcaaaaacacatggtgtgtggagcctggcttgaatgatgtggttcatgccaagttgcaaagta 34097670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 545 - 624
Target Start/End: Original strand, 34097873 - 34097952
Alignment:
Q  545 atgtagatatgtgcactattgcataacaatatttcaacaaaatttgctagtaaaagtatagtgttcgtgaaccagtaact 624  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  34097873 atgtagatatgtgcactattgcataacaatatttcaacaaaatttgctagtaaaaggatagtgttcgtgaaccagtaact 34097952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 660 - 729
Target Start/End: Original strand, 19129556 - 19129626
Alignment:
Q  660 tcccaccataggaaagtaggttttga-ccattatatttaagatgaacattgatcttatgatagtctcttca 729  Q
    ||||||||| ||||||| | |||||| |||||  |||||||| ||||||||||||||||||||||||||||    
T  19129556 tcccaccatgggaaagttgtttttgaaccatttgatttaagaggaacattgatcttatgatagtctcttca 19129626  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 628 - 716
Target Start/End: Complemental strand, 49708773 - 49708685
Alignment:
Q  628 ggtgacatttagggtgggtaagggaaagattttcccaccataggaaagtaggttttgaccattatatttaagatgaacattgatcttat 716  Q
    |||| |||||||||||||| ||||||||| ||||||||||| | ||||||| || || |||||| ||| |||| |||||| ||| ||||    
T  49708773 ggtggcatttagggtgggtgagggaaagaatttcccaccatggaaaagtagattatgcccattagattaaagaggaacatagattttat 49708685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 628 - 674
Target Start/End: Complemental strand, 52916745 - 52916699
Alignment:
Q  628 ggtgacatttagggtgggtaagggaaagattttcccaccataggaaa 674  Q
    ||||||||||||||||||||||||||||||| | ||||||| |||||    
T  52916745 ggtgacatttagggtgggtaagggaaagattcttccaccatgggaaa 52916699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 628 - 701
Target Start/End: Complemental strand, 24472655 - 24472582
Alignment:
Q  628 ggtgacatttagggtgggtaagggaaagattttcccaccataggaaagtaggttttgaccattatatttaagat 701  Q
    |||| ||||||||||||| |  ||||||| ||||||||| || |||| ||| |||||||||||| |||||||||    
T  24472655 ggtggcatttagggtgggaataggaaagagtttcccaccgtaagaaaatagtttttgaccattagatttaagat 24472582  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 628 - 676
Target Start/End: Original strand, 45534028 - 45534076
Alignment:
Q  628 ggtgacatttagggtgggtaagggaaagattttcccaccataggaaagt 676  Q
    |||| ||||||||||||||| ||| ||||||||||||||||| ||||||    
T  45534028 ggtggcatttagggtgggtagggggaagattttcccaccataagaaagt 45534076  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 625 - 676
Target Start/End: Original strand, 24471827 - 24471878
Alignment:
Q  625 tttggtgacatttagggtgggtaagggaaagattttcccaccataggaaagt 676  Q
    ||||||| ||||||||||||| | || ||||| |||||||||||||||||||    
T  24471827 tttggtggcatttagggtgggaatggaaaagagtttcccaccataggaaagt 24471878  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 628 - 691
Target Start/End: Complemental strand, 55880601 - 55880538
Alignment:
Q  628 ggtgacatttagggtgggtaagggaaagattttcccaccataggaaagtaggttttgaccatta 691  Q
    |||||||||||||||||| |||||||||| || ||||  |||| ||||| | ||||||||||||    
T  55880601 ggtgacatttagggtgggcaagggaaagaattccccattatagaaaagttgattttgaccatta 55880538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 155; Significance: 1e-81; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 1e-81
Query Start/End: Original strand, 628 - 826
Target Start/End: Original strand, 32355864 - 32356063
Alignment:
Q  628 ggtgacatttagggtgggtaagggaaagattttcccaccataggaaagtaggttttgaccattatatttaagatgaacattgatcttatgatagtctctt 727  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  32355864 ggtgacatttagggtgggtaagggaaagatttttccaccataggaaagtaggttttgaccattagatttaagatgaacattgatcttatgatagtctctt 32355963  T
Q  728 cagactaga-nnnnnnnccactttcttctaccaccgttatcttgtctatgtgtgtgccttttttcagaaaccatggttccaagttccaacaaactctaca 826  Q
    || ||||||        |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32355964 cacactagattttttttccactttcttctaccaccgttatcttgtctatgtgtgtgcctttttccagaaaccatggttccaagttccaacaaactctaca 32356063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 827 - 943
Target Start/End: Original strand, 32356115 - 32356229
Alignment:
Q  827 tataactataaacatatggtttttcaatttcatctcattcctttgctatctcaatcaaattaaattatagaaatcattgagg-caatcattaatggatat 925  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||   |    
T  32356115 tataactataaacatatgatttttcaatttcatctcattcctttgttatctcaatcaaattaaattatagaaatcattaaggccaatcattaatgg---t 32356211  T
Q  926 acgtctgtcattgagttt 943  Q
    ||||||||||||||||||    
T  32356212 acgtctgtcattgagttt 32356229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 626 - 683
Target Start/End: Original strand, 23379330 - 23379387
Alignment:
Q  626 ttggtgacatttagggtgggtaagggaaagattttcccaccataggaaagtaggtttt 683  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  23379330 ttggtggcatttagggtgggtaagggaaagattttcccactataggaaagtagctttt 23379387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 627 - 726
Target Start/End: Original strand, 44384513 - 44384612
Alignment:
Q  627 tggtgacatttagggtgggtaagggaaagattttcccaccataggaaagtaggttttgaccattatatttaagatgaacattgatcttatgatagtctct 726  Q
    ||||| |||||||||||||| ||| ||||| ||||||| ||||| ||||||| |||| ||||||| ||| || |  |||||||||| ||| |||||||||    
T  44384513 tggtggcatttagggtgggtgaggaaaagaatttcccatcatagaaaagtagcttttaaccattagattaaatagaaacattgatcatattatagtctct 44384612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 628 - 676
Target Start/End: Complemental strand, 42996373 - 42996325
Alignment:
Q  628 ggtgacatttagggtgggtaagggaaagattttcccaccataggaaagt 676  Q
    |||| |||||||| ||||||||||||||||||||||||||||| |||||    
T  42996373 ggtggcatttaggatgggtaagggaaagattttcccaccatagaaaagt 42996325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 627 - 672
Target Start/End: Original strand, 10343329 - 10343374
Alignment:
Q  627 tggtgacatttagggtgggtaagggaaagattttcccaccatagga 672  Q
    ||||| |||||||||||||| ||||||||||||| |||||||||||    
T  10343329 tggtggcatttagggtgggtgagggaaagatttttccaccatagga 10343374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 627 - 675
Target Start/End: Original strand, 53714486 - 53714534
Alignment:
Q  627 tggtgacatttagggtgggtaagggaaagattttcccaccataggaaag 675  Q
    ||||| |||||||||||||| ||||||||| ||||||||||| ||||||    
T  53714486 tggtggcatttagggtgggtgagggaaagaatttcccaccatgggaaag 53714534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 628 - 674
Target Start/End: Complemental strand, 50306571 - 50306525
Alignment:
Q  628 ggtgacatttagggtgggtaagggaaagattttcccaccataggaaa 674  Q
    |||| ||||||||||||| | |||||||| |||||||||||||||||    
T  50306571 ggtggcatttagggtgggaaggggaaagagtttcccaccataggaaa 50306525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1052 (Bit Score: 139; Significance: 4e-72; HSPs: 3)
Name: scaffold1052
Description:

Target: scaffold1052; HSP #1
Raw Score: 139; E-Value: 4e-72
Query Start/End: Original strand, 627 - 826
Target Start/End: Original strand, 329 - 528
Alignment:
Q  627 tggtgacatttagggtgggtaagggaaagattttcccaccataggaaagtaggttttgaccattatatttaagatgaacattgatcttatgatagtctct 726  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  329 tggtgacatttagggtgggtaaggaaaagattttcccaccataggaaagtaggttttgaccattagatttaagatgaacattgatcttatgatagtctct 428  T
Q  727 tcagactagannnnnnnccactttcttctaccaccgttatcttgtctatgtgtgtgccttttttcagaaaccatggttccaagttccaacaaactctaca 826  Q
    ||| |  |||       ||||||||||||||||||||||| |||||||||||||||||||||| || || |||||||||||| |||||||||||||||||    
T  429 tcacataagatttttttccactttcttctaccaccgttatattgtctatgtgtgtgcctttttccaaaatccatggttccaaattccaacaaactctaca 528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1052; HSP #2
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 827 - 943
Target Start/End: Original strand, 580 - 697
Alignment:
Q  827 tataactataaacatatggtttttcaatttcatctcattcctttgctatctcaatcaaattaaattatagaaatcattgagg-caatcattaatggatat 925  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||| ||| |||||||||||||||||    
T  580 tataactataaacatatggtttttcaatttcatctcattcctttgttatttcaatcaaattaaactatagaaatcattaaggccaatcattaatggatat 679  T
Q  926 acgtctgtcattgagttt 943  Q
    |||||| |||||||||||    
T  680 acgtctttcattgagttt 697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1052; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 628 - 701
Target Start/End: Complemental strand, 1614 - 1541
Alignment:
Q  628 ggtgacatttagggtgggtaagggaaagattttcccaccataggaaagtaggttttgaccattatatttaagat 701  Q
    |||| |||||||||||||||||||||||| || |||||||| ||||| ||| ||| |||||||| |||||||||    
T  1614 ggtggcatttagggtgggtaagggaaagagttacccaccattggaaaatagatttagaccattagatttaagat 1541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 139; Significance: 4e-72; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 139; E-Value: 4e-72
Query Start/End: Original strand, 628 - 826
Target Start/End: Original strand, 6182092 - 6182290
Alignment:
Q  628 ggtgacatttagggtgggtaagggaaagattttcccaccataggaaagtaggttttgaccattatatttaagatgaacattgatcttatgatagtctctt 727  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  6182092 ggtgacatttagggtgggtaagggaaagatttttccaccataggaaagtagattttgaccattagatttaagatgaacattgatcttatgatagtctctt 6182191  T
Q  728 cagact-agannnnnnnccactttcttctaccaccgttatcttgtctatgtgtgtgccttttttcagaaaccatggttccaagttccaacaaactctaca 826  Q
    || ||| | |       ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  6182192 ca-actaaaatttttttccactttcttctaccaccgttatcttgtctatgtgtgtgtctttttccagaaaccatggttccaagttccaacaaactctaca 6182290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 827 - 943
Target Start/End: Original strand, 6182342 - 6182456
Alignment:
Q  827 tataactataaacatatggtttttcaatttcatctcattcctttgctatctcaatcaaattaaattatagaaatcattgagg-caatcattaatggatat 925  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||   |    
T  6182342 tataactataaacatatgatttttcaatttcatctcattcctttgttatctcaatcaaattaaattatagaaatcattaaggccaatcattaatgg---t 6182438  T
Q  926 acgtctgtcattgagttt 943  Q
    ||||||||||||||||||    
T  6182439 acgtctgtcattgagttt 6182456  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 627 - 736
Target Start/End: Original strand, 6197914 - 6198023
Alignment:
Q  627 tggtgacatttagggtgggtaagggaaagattttcccaccataggaaagtaggttttgaccattatatttaagatgaacattgatcttatgatagtctct 726  Q
    ||||| |||||||||||||||||||||||| || ||||  || ||||||||| |||| ||||||| ||| || | ||||| ||||||||| ||  |||||    
T  6197914 tggtggcatttagggtgggtaagggaaagaattccccattatgggaaagtagtttttaaccattaaattaaataggaacactgatcttattattttctct 6198013  T
Q  727 tcagactaga 736  Q
    ||| ||||||    
T  6198014 tcatactaga 6198023  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 627 - 701
Target Start/End: Complemental strand, 42946518 - 42946444
Alignment:
Q  627 tggtgacatttagggtgggtaagggaaagattttcccaccataggaaagtaggttttgaccattatatttaagat 701  Q
    ||||| ||||||||||||| | |||||||| ||||||||||||  ||| ||| ||| |||||||| |||||||||    
T  42946518 tggtggcatttagggtgggaatgggaaagagtttcccaccatacaaaaatagctttcgaccattagatttaagat 42946444  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 628 - 701
Target Start/End: Complemental strand, 6183163 - 6183090
Alignment:
Q  628 ggtgacatttagggtgggtaagggaaagattttcccaccataggaaagtaggttttgaccattatatttaagat 701  Q
    |||| |||||||||||||||||||||| | || |||||||| | ||| ||| ||| |||||||| |||||||||    
T  6183163 ggtggcatttagggtgggtaagggaaaaagttacccaccatggaaaaatagatttagaccattagatttaagat 6183090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 628 - 676
Target Start/End: Complemental strand, 6198951 - 6198903
Alignment:
Q  628 ggtgacatttagggtgggtaagggaaagattttcccaccataggaaagt 676  Q
    |||| |||||||||||||| ||||||||| ||||||| |||||||||||    
T  6198951 ggtggcatttagggtgggtgagggaaagaatttcccatcataggaaagt 6198903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 625 - 716
Target Start/End: Complemental strand, 5142605 - 5142514
Alignment:
Q  625 tttggtgacatttagggtgggtaagggaaagattttcccaccataggaaagtaggttttgaccattatatttaagatgaacattgatcttat 716  Q
    ||||||| |||||||||||||| ||||||||| ||| |||||||   ||||||| || || |||||| ||| |||| |||||| ||| ||||    
T  5142605 tttggtggcatttagggtgggtgagggaaagaattttccaccatgaaaaagtagattatgtccattagattaaagaggaacatagattttat 5142514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 941 - 1010
Target Start/End: Original strand, 6182471 - 6182543
Alignment:
Q  941 tttaattaatccaatttga-ctttcaacag-tgaca--aactatggtaaaatcaacaaaataggacacacaaat 1010  Q
    |||||||||| |||||||| |||||||||| |||||  ||||||| |||||||||| |||||||||||||||||    
T  6182471 tttaattaattcaatttgaactttcaacaggtgacagaaactatgataaaatcaac-aaataggacacacaaat 6182543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 628 - 674
Target Start/End: Complemental strand, 26021959 - 26021913
Alignment:
Q  628 ggtgacatttagggtgggtaagggaaagattttcccaccataggaaa 674  Q
    |||| ||||||||||||| | |||||||| |||||||||||||||||    
T  26021959 ggtggcatttagggtgggaaggggaaagagtttcccaccataggaaa 26021913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 626 - 691
Target Start/End: Original strand, 5504342 - 5504407
Alignment:
Q  626 ttggtgacatttagggtgggtaagggaaagattttcccaccataggaaagtaggttttgaccatta 691  Q
    |||||| ||||||||||||| | |||||||| |||||||| |||| |||||   ||||||||||||    
T  5504342 ttggtggcatttagggtgggaaggggaaagagtttcccactatagaaaagtgatttttgaccatta 5504407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 3e-45; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 827 - 943
Target Start/End: Original strand, 5101075 - 5101191
Alignment:
Q  827 tataactataaacatatggtttttcaatttcatctcattcctttgctatctcaatcaaattaaattatagaaatcattgagg-caatcattaatggatat 925  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  5101075 tataactataaacatatggtttttcaatttcatctcattcctttgttatctcaatcaaattaaattatagaaatcattaaggccaatcattaatggatat 5101174  T
Q  926 acgtctgtcattgagttt 943  Q
    ||||| ||||||||||||    
T  5101175 acgtc-gtcattgagttt 5101191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 746 - 826
Target Start/End: Original strand, 5100943 - 5101023
Alignment:
Q  746 actttcttctaccaccgttatcttgtctatgtgtgtgccttttttcagaaaccatggttccaagttccaacaaactctaca 826  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5100943 actttcttctaccaccgttatcttgtctatgtgtgtgccttttttcagaaaccatggttccaagttccaacaaactctaca 5101023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 626 - 726
Target Start/End: Original strand, 4530191 - 4530291
Alignment:
Q  626 ttggtgacatttagggtgggtaagggaaagattttcccaccataggaaagtaggttttgaccattatatttaagatgaacattgatcttatgatagtctc 725  Q
    |||||| |||||||||||||| ||||||||| ||||||| ||||| ||||||| |||| ||||||| ||| || |  |||||||||| ||| ||||||||    
T  4530191 ttggtggcatttagggtgggtgagggaaagaatttcccatcatagaaaagtagcttttaaccattagattaaatagaaacattgatcatattatagtctc 4530290  T
Q  726 t 726  Q
    |    
T  4530291 t 4530291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 628 - 701
Target Start/End: Complemental strand, 5101899 - 5101826
Alignment:
Q  628 ggtgacatttagggtgggtaagggaaagattttcccaccataggaaagtaggttttgaccattatatttaagat 701  Q
    |||| |||||||||||||||||| ||||| || |||||||| ||||| ||| ||| |||||||| |||||||||    
T  5101899 ggtggcatttagggtgggtaaggtaaagagttacccaccatgggaaaatagatttagaccattagatttaagat 5101826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 628 - 700
Target Start/End: Complemental strand, 22425569 - 22425497
Alignment:
Q  628 ggtgacatttagggtgggtaagggaaagattttcccaccataggaaagtaggttttgaccattatatttaaga 700  Q
    |||| |||||||| ||||| ||||||||| ||||||||||||||||||||  || ||||||||| ||| ||||    
T  22425569 ggtggcatttaggatgggtgagggaaagaatttcccaccataggaaagtatattatgaccattagattaaaga 22425497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 628 - 675
Target Start/End: Original strand, 45597624 - 45597671
Alignment:
Q  628 ggtgacatttagggtgggtaagggaaagattttcccaccataggaaag 675  Q
    |||| |||||||||||||| ||||||||| ||||||||||||||||||    
T  45597624 ggtggcatttagggtgggtgagggaaagaatttcccaccataggaaag 45597671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 633 - 691
Target Start/End: Complemental strand, 37689965 - 37689907
Alignment:
Q  633 catttagggtgggtaagggaaagattttcccaccataggaaagtaggttttgaccatta 691  Q
    |||||||||||||||||||||||| ||||||| ||||  ||||| | ||||||||||||    
T  37689965 catttagggtgggtaagggaaagagtttcccatcataaaaaagttgattttgaccatta 37689907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 628 - 677
Target Start/End: Complemental strand, 22862648 - 22862599
Alignment:
Q  628 ggtgacatttagggtgggtaagggaaagattttcccaccataggaaagta 677  Q
    |||| |||||||| ||||| ||||||||| ||||||||||||||||||||    
T  22862648 ggtggcatttaggatgggtgagggaaagaatttcccaccataggaaagta 22862599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 627 - 675
Target Start/End: Complemental strand, 13537045 - 13536997
Alignment:
Q  627 tggtgacatttagggtgggtaagggaaagattttcccaccataggaaag 675  Q
    ||||| |||||||||||||| ||||||||| ||||||||||| ||||||    
T  13537045 tggtggcatttagggtgggtgagggaaagaatttcccaccatgggaaag 13536997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 628 - 674
Target Start/End: Original strand, 3788435 - 3788481
Alignment:
Q  628 ggtgacatttagggtgggtaagggaaagattttcccaccataggaaa 674  Q
    |||| ||||||||||||| | |||||||| |||||||||||||||||    
T  3788435 ggtggcatttagggtgggaaggggaaagagtttcccaccataggaaa 3788481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 941 - 1010
Target Start/End: Original strand, 5101206 - 5101278
Alignment:
Q  941 tttaattaatccaatttg-actttcaacag-tgaca--aactatggtaaaatcaacaaaataggacacacaaat 1010  Q
    |||||||||| ||||||| ||||||||||| |||||  ||||||| |||||||||| |||||||||||||||||    
T  5101206 tttaattaattcaatttggactttcaacaggtgacagaaactatgataaaatcaac-aaataggacacacaaat 5101278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 627 - 676
Target Start/End: Complemental strand, 4125466 - 4125417
Alignment:
Q  627 tggtgacatttagggtgggtaagggaaagattttcccaccataggaaagt 676  Q
    ||||| ||||||||||||| | |||||||| |||||||| ||||||||||    
T  4125466 tggtggcatttagggtgggaatgggaaagagtttcccactataggaaagt 4125417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 628 - 677
Target Start/End: Original strand, 22424796 - 22424845
Alignment:
Q  628 ggtgacatttagggtgggtaagggaaagattttcccaccataggaaagta 677  Q
    |||| |||||||||||||| ||||||||| || |||| ||||||||||||    
T  22424796 ggtggcatttagggtgggtgagggaaagaattccccatcataggaaagta 22424845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 628 - 736
Target Start/End: Original strand, 510453 - 510561
Alignment:
Q  628 ggtgacatttagggtgggtaagggaaagattttcccaccataggaaagtaggttttgaccattatatttaagatgaacattgatcttatgatagtctctt 727  Q
    |||| ||||||| |||||||||||||||| || ||||  || ||||||||| |||| ||||||| ||| || | ||||| ||||||||| |||||||||     
T  510453 ggtggcatttagagtgggtaagggaaagaattccccattatgggaaagtagtttttaaccattaaattaaataggaacactgatcttattatagtctctc 510552  T
Q  728 cagactaga 736  Q
    || ||||||    
T  510553 catactaga 510561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 628 - 736
Target Start/End: Original strand, 8491468 - 8491576
Alignment:
Q  628 ggtgacatttagggtgggtaagggaaagattttcccaccataggaaagtaggttttgaccattatatttaagatgaacattgatcttatgatagtctctt 727  Q
    |||| |||||||||||||| |||||||||||||||||| ||||||||| |  |||  |||| || ||| ||||  ||||||||| |||  |||||||||     
T  8491468 ggtggcatttagggtgggtgagggaaagattttcccactataggaaagcaaatttataccactagattaaagagaaacattgattttaacatagtctctc 8491567  T
Q  728 cagactaga 736  Q
    || ||||||    
T  8491568 cacactaga 8491576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 628 - 676
Target Start/End: Complemental strand, 45163165 - 45163117
Alignment:
Q  628 ggtgacatttagggtgggtaagggaaagattttcccaccataggaaagt 676  Q
    |||| |||||||||||||| ||||||||||||||||| |||||||||||    
T  45163165 ggtggcatttagggtgggtgagggaaagattttcccatcataggaaagt 45163117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 633 - 676
Target Start/End: Original strand, 31694167 - 31694210
Alignment:
Q  633 catttagggtgggtaagggaaagattttcccaccataggaaagt 676  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||    
T  31694167 catttagggtgggtagggggaagattttcccaccataggaaagt 31694210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 627 - 664
Target Start/End: Complemental strand, 788521 - 788484
Alignment:
Q  627 tggtgacatttagggtgggtaagggaaagattttccca 664  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  788521 tggtgacatttagggtgggtgagggaaagagtttccca 788484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 628 - 701
Target Start/End: Complemental strand, 35886158 - 35886085
Alignment:
Q  628 ggtgacatttagggtgggtaagggaaagattttcccaccataggaaagtaggttttgaccattatatttaagat 701  Q
    |||| |||||||||| || |  ||||||| ||||||||| || |||| ||| |||||||||||| |||||||||    
T  35886158 ggtggcatttagggtaggaataggaaagagtttcccaccgtaagaaaatagtttttgaccattagatttaagat 35886085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 628 - 691
Target Start/End: Original strand, 6353684 - 6353747
Alignment:
Q  628 ggtgacatttagggtgggtaagggaaagattttcccaccataggaaagtaggttttgaccatta 691  Q
    |||| |||||||||||||| ||||||||||||||||| ||||||||||||  |||| |||||||    
T  6353684 ggtggcatttagggtgggtgagggaaagattttcccatcataggaaagtaaattttaaccatta 6353747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 662 - 716
Target Start/End: Complemental strand, 326295 - 326241
Alignment:
Q  662 ccaccataggaaagtaggttttgaccattatatttaagatgaacattgatcttat 716  Q
    ||||||| | |||||| ||||||||||||| ||||||||||||||||||||||||    
T  326295 ccaccatggaaaagtaagttttgaccattaaatttaagatgaacattgatcttat 326241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 627 - 691
Target Start/End: Complemental strand, 30003615 - 30003551
Alignment:
Q  627 tggtgacatttagggtgggtaagggaaagattttcccaccataggaaagtaggttttgaccatta 691  Q
    ||||| |||||||||||||||||||||||| ||||| ||||||  ||||| | ||||||||||||    
T  30003615 tggtggcatttagggtgggtaagggaaagagtttcctaccataaaaaagttgattttgaccatta 30003551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 657 - 729
Target Start/End: Complemental strand, 17591404 - 17591331
Alignment:
Q  657 ttttcccaccataggaaagtaggttttga-ccattatatttaagatgaacattgatcttatgatagtctcttca 729  Q
    |||| ||||||| ||||||| | |||||| |||||  |||||||| ||||||||||||||| ||||||||||||    
T  17591404 tttttccaccatgggaaagttgtttttgaaccatttgatttaagaggaacattgatcttataatagtctcttca 17591331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 657 - 729
Target Start/End: Complemental strand, 36913012 - 36912939
Alignment:
Q  657 ttttcccaccataggaaagtaggttttga-ccattatatttaagatgaacattgatcttatgatagtctcttca 729  Q
    ||||| |||||| | ||||| | |||||| |||||  |||||||| ||||||||||||||||||||||||||||    
T  36913012 ttttctcaccatggaaaagttgtttttgaaccatttgatttaagaggaacattgatcttatgatagtctcttca 36912939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 626 - 677
Target Start/End: Complemental strand, 19855111 - 19855060
Alignment:
Q  626 ttggtgacatttagggtgggtaagggaaagattttcccaccataggaaagta 677  Q
    |||||| |||||||||||||| ||||||||| || |||| ||||||||||||    
T  19855111 ttggtggcatttagggtgggtgagggaaagaattccccatcataggaaagta 19855060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 628 - 671
Target Start/End: Original strand, 30002864 - 30002907
Alignment:
Q  628 ggtgacatttagggtgggtaagggaaagattttcccaccatagg 671  Q
    |||| ||||||||||||| | |||||||||||||||||||||||    
T  30002864 ggtggcatttagggtgggaaggggaaagattttcccaccatagg 30002907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 657 - 729
Target Start/End: Original strand, 36912274 - 36912344
Alignment:
Q  657 ttttcccaccataggaaagtaggttttga-ccattatatttaagatgaacattgatcttatgatagtctcttca 729  Q
    |||||||||||| ||||||| | |||||| |||||  ||||||||   ||||||||||||||||||||||||||    
T  36912274 ttttcccaccatgggaaagttgtttttgaaccatttgatttaaga---acattgatcttatgatagtctcttca 36912344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 628 - 665
Target Start/End: Complemental strand, 6354733 - 6354696
Alignment:
Q  628 ggtgacatttagggtgggtaagggaaagattttcccac 665  Q
    |||| |||||||||||||| ||||||||||||||||||    
T  6354733 ggtggcatttagggtgggtgagggaaagattttcccac 6354696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 657 - 729
Target Start/End: Original strand, 17590593 - 17590666
Alignment:
Q  657 ttttcccaccataggaaagtaggttttga-ccattatatttaagatgaacattgatcttatgatagtctcttca 729  Q
    |||||| ||||| ||||||  | |||||| |||||  |||||||| ||||||||||||||||||| ||||||||    
T  17590593 ttttcctaccatgggaaagatgtttttgaaccatttgatttaagaggaacattgatcttatgataatctcttca 17590666  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 628 - 677
Target Start/End: Original strand, 19854336 - 19854385
Alignment:
Q  628 ggtgacatttagggtgggtaagggaaagattttcccaccataggaaagta 677  Q
    |||| |||||||  ||||| ||||||||| ||||||||||||||||||||    
T  19854336 ggtggcatttagaatgggtgagggaaagaatttcccaccataggaaagta 19854385  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 628 - 701
Target Start/End: Original strand, 42310849 - 42310922
Alignment:
Q  628 ggtgacatttagggtgggtaagggaaagattttcccaccataggaaagtaggttttgaccattatatttaagat 701  Q
    |||| ||||||||||||| | |||||||| ||||||||||||  ||| ||| ||| || ||||| |||||||||    
T  42310849 ggtggcatttagggtgggaatgggaaagagtttcccaccatacaaaaatagctttcgatcattagatttaagat 42310922  T

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Target: chr7 (Bit Score: 39; Significance: 0.000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 628 - 726
Target Start/End: Original strand, 37692844 - 37692942
Alignment:
Q  628 ggtgacatttagggtgggtaagggaaagattttcccaccataggaaagtaggttttgaccattatatttaagatgaacattgatcttatgatagtctct 726  Q
    |||| |||||||||||||| ||||||||| ||||||| ||||| ||||||| |||| ||||||  ||| || |  |||||||||| ||| |||||||||    
T  37692844 ggtggcatttagggtgggtgagggaaagaatttcccatcatagaaaagtagcttttaaccattggattaaatagaaacattgatcatattatagtctct 37692942  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 628 - 677
Target Start/End: Original strand, 36661685 - 36661734
Alignment:
Q  628 ggtgacatttagggtgggtaagggaaagattttcccaccataggaaagta 677  Q
    |||| |||||||||||||| ||||||||| ||||||||||| ||||||||    
T  36661685 ggtggcatttagggtgggtgagggaaagaatttcccaccatgggaaagta 36661734  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 693 - 729
Target Start/End: Original strand, 14735422 - 14735458
Alignment:
Q  693 atttaagatgaacattgatcttatgatagtctcttca 729  Q
    |||||||| ||||||||||||||||||||||||||||    
T  14735422 atttaagaggaacattgatcttatgatagtctcttca 14735458  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 628 - 676
Target Start/End: Complemental strand, 28869822 - 28869774
Alignment:
Q  628 ggtgacatttagggtgggtaagggaaagattttcccaccataggaaagt 676  Q
    |||| |||||||||||||| | ||||||||||||||| |||||||||||    
T  28869822 ggtggcatttagggtgggtgatggaaagattttcccatcataggaaagt 28869774  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 662 - 716
Target Start/End: Original strand, 10200129 - 10200183
Alignment:
Q  662 ccaccataggaaagtaggttttgaccattatatttaagatgaacattgatcttat 716  Q
    |||||||||||||||| |||  |||||||| |||||||| || ||||||||||||    
T  10200129 ccaccataggaaagtaagttgcgaccattagatttaagaggagcattgatcttat 10200183  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 657 - 729
Target Start/End: Complemental strand, 14736190 - 14736117
Alignment:
Q  657 ttttcccaccataggaaagtaggttttga-ccattatatttaagatgaacattgatcttatgatagtctcttca 729  Q
    |||||| ||||| ||||||  | |||||| |||||  |||||||| ||||||||||||||||||| ||||||||    
T  14736190 ttttcctaccatgggaaagatgtttttgaaccatttgatttaagaggaacattgatcttatgataatctcttca 14736117  T

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Target: scaffold1657 (Bit Score: 37; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1657
Description:

Target: scaffold1657; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 628 - 724
Target Start/End: Original strand, 909 - 1005
Alignment:
Q  628 ggtgacatttagggtgggtaagggaaagattttcccaccataggaaagtaggttttgaccattatatttaagatgaacattgatcttatgatagtct 724  Q
    ||||||||||||||||| | |||||||||||||||||| || ||||||||  ||| | |||||| ||| |||| || ||| ||| |||| |||||||    
T  909 ggtgacatttagggtggatgagggaaagattttcccactattggaaagtaaatttaggccattacattaaagaggagcatagattttattatagtct 1005  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 628 - 677
Target Start/End: Complemental strand, 6842004 - 6841955
Alignment:
Q  628 ggtgacatttagggtgggtaagggaaagattttcccaccataggaaagta 677  Q
    |||| |||||||| ||||| ||||||||| ||||||||||||||||||||    
T  6842004 ggtggcatttaggatgggtgagggaaagaatttcccaccataggaaagta 6841955  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 628 - 676
Target Start/End: Original strand, 10359680 - 10359728
Alignment:
Q  628 ggtgacatttagggtgggtaagggaaagattttcccaccataggaaagt 676  Q
    |||| |||||| | ||||||||||||||||||||||||||||| |||||    
T  10359680 ggtggcatttatgatgggtaagggaaagattttcccaccatagaaaagt 10359728  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 628 - 677
Target Start/End: Original strand, 6841232 - 6841281
Alignment:
Q  628 ggtgacatttagggtgggtaagggaaagattttcccaccataggaaagta 677  Q
    |||| |||||||||||||| ||||||||| || |||| ||||||||||||    
T  6841232 ggtggcatttagggtgggtgagggaaagaattccccatcataggaaagta 6841281  T

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Target: scaffold0268 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 851 - 904
Target Start/End: Original strand, 20445 - 20498
Alignment:
Q  851 caatttcatctcattcctttgctatctcaatcaaattaaattatagaaatcatt 904  Q
    |||||||||| | |||||||| |||||||| ||||||  |||||||||||||||    
T  20445 caatttcatccccttcctttgttatctcaaacaaattggattatagaaatcatt 20498  T

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