View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5180-Insertion-3 (Length: 583)
Name: NF5180-Insertion-3
Description: NF5180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5180-Insertion-3 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 572; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 8 - 583
Target Start/End: Original strand, 32812268 - 32812843
Alignment:
| Q |
8 |
caagcttgataacctactacctttaggcaatgaatctggtgtctttgaagcatcctcagaagaactcgactttaaggtttttcaattaacctctaaaaat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32812268 |
caagcttgataacctactacctttaggcaatgaatctggtgtctttgaagcatcctcagaagaactcgactttaaggtttttcaattaacctctaaaaat |
32812367 |
T |
|
| Q |
108 |
atcaacaaactgaaggaaaaagcaaaaattaatagtattgcccgtgtcactagttttaatgtaatcaccacacatctatggagatgcaaagcgttatctg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32812368 |
atcaacaaactgaaggaaaaagcaaaaattaatagtattgcccgtgtcactagttttaatgtaatcaccacacatctatggagatgcaaagcgttatctg |
32812467 |
T |
|
| Q |
208 |
ggccgtatgatcctaacaggtcatcaactatactatatgctgttgacatacgttcaagattgaatcctccattgccgagagagtacgctgggaatgcagt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32812468 |
ggccgtatgatcctaacaggtcatcaactatactatatgctgttgacatacgttcaagattgaatcctccattgccgagagagtacgctgggaatgcagt |
32812567 |
T |
|
| Q |
308 |
tttaacggcgtaagcttcggcaaagtgtgaggaattgaaggaaggtgaattctcaaggttggtggagatggtgtgggagggtacaaaaagaatgggtgat |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32812568 |
tttaacggcgtaagcttcggcaaagtgtgaggaattgaaggaaggtgaattctcaaggttggtggagatggtgtgggagggtacaaaaagaatgggtgat |
32812667 |
T |
|
| Q |
408 |
gagtatgcaaggtctattattgattggggagaattgtataatggttttccgaatggagagcttttggtgtcttcatggtggaggttagggtttgaagagg |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32812668 |
gagtatgcaaggtctattattgattggggagaattgtataatggttttccgaatggagagcttttggtgtcttcatggtggaggttagggtttgaagagg |
32812767 |
T |
|
| Q |
508 |
tggagtatccatgggggaagcctaagtattgttgtccagtagtttatcataagaaggatattatactattgttccc |
583 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
32812768 |
tggagtatccatgggggaagcctaagtattgttgtccagtggtttatcataagaaggatattatactattgttccc |
32812843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 24 - 577
Target Start/End: Original strand, 32829814 - 32830367
Alignment:
| Q |
24 |
ctacctttaggcaatgaatctggtgtctttgaagcatcctcagaagaactcgactttaaggtttttcaattaacctctaaaaatatcaacaaactgaagg |
123 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||||||||| | ||||| | |||||||||| | || | | || | |||||||| || |||| |
|
|
| T |
32829814 |
ctacctttaggcattaaatctggtgtctttgaagcatcctcagaagaatttgacttcatggtttttcaactgacatatgaagacatcaacaaccttaagg |
32829913 |
T |
|
| Q |
124 |
aaaaagcaaaaattaatagtattgcccgtgtcactagttttaatgtaatcaccacacatctatggagatgcaaagcgttatctgggccgtatgatcctaa |
223 |
Q |
| |
|
|||| |||||| ||||| | | ||||||| ||||||||||| || || ||||| |||||||||| ||||| || ||| | ||||||||||| |
|
|
| T |
32829914 |
aaaaggcaaaaggtaataacacctctcgtgtcatcagttttaatgttgtcgccgcacatatatggagatgtaaagcattgtctaaatcatatgatcctaa |
32830013 |
T |
|
| Q |
224 |
caggtcatcaactatactatatgctgttgacatacgttcaagattgaatcctccattgccgagagagtacgctgggaatgcagttttaacggcgtaagct |
323 |
Q |
| |
|
|| ||||| | ||| ||||||| ||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||| ||||| ||| |
|
|
| T |
32830014 |
tagatcatctattattttatatgcggttgatatacgttcaagattgaatcctccattgccgagagcgtacactgggaatgcagtattaacagcgtacgct |
32830113 |
T |
|
| Q |
324 |
tcggcaaagtgtgaggaattgaaggaaggtgaattctcaaggttggtggagatggtgtgggagggtacaaaaagaatgggtgatgagtatgcaaggtcta |
423 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||| ||||||| ||||||| |||||||| |||| |
|
|
| T |
32830114 |
tcggcaaagtgtgaggaattgaaggaaggtgaattttcaaggttggtggagatggtggaagagggttcaagaagaatgagtgatgaatatgcaagatcta |
32830213 |
T |
|
| Q |
424 |
ttattgattggggagaattgtataatggttttccgaatggagagcttttggtgtcttcatggtggaggttagggtttgaagaggtggagtatccatgggg |
523 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32830214 |
ttattgattggggagagttgtataatggttttccaaatggggatgttttggtgtcttcatggtggaggctagggtttgaagaggtggagtatccatgggg |
32830313 |
T |
|
| Q |
524 |
gaagcctaagtattgttgtccagtagtttatcataagaaggatattatactatt |
577 |
Q |
| |
|
||||||||||||||||||||| || |||||||||| |||||||||||||||||| |
|
|
| T |
32830314 |
gaagcctaagtattgttgtcctgtggtttatcataggaaggatattatactatt |
32830367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University