View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5180-Insertion-4 (Length: 536)
Name: NF5180-Insertion-4
Description: NF5180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5180-Insertion-4 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0268 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 8 - 536
Target Start/End: Original strand, 19457049 - 19457577
Alignment:
| Q |
8 |
tggcaaaacctcaccgacggggaacgccacttcatctctcatgtcctcgccttcttcgctgcctccgacggcatcgtccttgaaaatctcgccggtagat |
107 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19457049 |
tggcaaaacctcaccgacggcgaacgccacttcatctctcatgtcctcgccttcttcgctgcctccgacggcatcgtccttgaaaatctcgccggtagat |
19457148 |
T |
|
| Q |
108 |
ttatgaaagaaatccaagtctccgaagcacgtgccttctacggtttccagattgcaattgaaaacatccactctgagatgtattctcttctcctcgaaac |
207 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19457149 |
ttatgaaagaaatccaagtctctgaagcacgtgccttctacggtttccagattgcaattgaaaacatccactctgagatgtattctcttctcctcgaaac |
19457248 |
T |
|
| Q |
208 |
gtatataagtgattctgctgaaaagaatcgcttatttcacgcaattgaaactattccatgtattgcnnnnnnngctgattgggcgatgaaatggatcgat |
307 |
Q |
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||||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| || ||||||||||||||||||||||||||| |
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| T |
19457249 |
gtatataagcgattccgctgaaaagaatcgcttatttcatgcaattgaaacaattccatgtatcgcgaagaaagctgattgggcgatgaaatggatcgat |
19457348 |
T |
|
| Q |
308 |
tcaagcgattcttttgcagaaagaatcgttgcatttgcttgtgttgaaggaatctttttctccggaagcttctgtgcgattttttggttgaaaaagcgtg |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
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| T |
19457349 |
tcaagcgattcttttgcagaaagaatcgttgcgtttgcttgtgttgaaggaatctttttctccggaagcttctgtgcgattttctggttgaaaaagcgcg |
19457448 |
T |
|
| Q |
408 |
gtttaatgccgggattaaccttctcaaacgagcttatttcacgcgatgaaggattacactgtgatttcgcttgtttgttatactcacttctacgaaagaa |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19457449 |
gtttaatgccgggattaaccttctcaaacgagcttatttcacgcgacgaaggattgcactgtgatttcgcttgtttgttatactcacttctacgaaagaa |
19457548 |
T |
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| Q |
508 |
gctaagttcagagcgcgtgaaagaaattg |
536 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
19457549 |
gctaagttcagagcgcgtgaaagaaattg |
19457577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 14 - 492
Target Start/End: Complemental strand, 25026036 - 25025558
Alignment:
| Q |
14 |
aacctcaccgacggggaacgccacttcatctctcatgtcctcgccttcttcgctgcctccgacggcatcgtccttgaaaatctcgccggtagatttatga |
113 |
Q |
| |
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|||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||| |||||||||||||| ||||| |||| |
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| T |
25026036 |
aacctcaccgacggcgaacgccacttcatctctcacatcctcgccttcttcgccgcctccgacggtatcgtcctcgaaaatctcgccggaagattcatga |
25025937 |
T |
|
| Q |
114 |
aagaaatccaagtctccgaagcacgtgccttctacggtttccagattgcaattgaaaacatccactctgagatgtattctcttctcctcgaaacgtatat |
213 |
Q |
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||||| | ||| |||| ||||| ||||| |||||||| || || || || ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
25025936 |
aagaagttcaaatctctgaagcgcgtgctttctacgggtttcaaatcgctattgaaaacatccactcagagatgtattctcttctcctcgaaacgtatat |
25025837 |
T |
|
| Q |
214 |
aagtgattctgctgaaaagaatcgcttatttcacgcaattgaaactattccatgtattgcnnnnnnngctgattgggcgatgaaatggatcgattcaagc |
313 |
Q |
| |
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||| |||||||||||||||||||| ||||||||||||||||| || ||||| |||||||| ||||||||||| |||||||||||||||||||| |
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| T |
25025836 |
aagcgattctgctgaaaagaatcgattatttcacgcaattgacacaattccgtgtattgctaagaaagctgattgggctttgaaatggatcgattcaagc |
25025737 |
T |
|
| Q |
314 |
gattcttttgcagaaagaatcgttgcatttgcttgtgttgaaggaatctttttctccggaagcttctgtgcgattttttggttgaaaaagcgtggtttaa |
413 |
Q |
| |
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|||||||||||||||||||||||||| || ||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||| || ||||||| |
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| T |
25025736 |
gattcttttgcagaaagaatcgttgctttcgcttgtgttgaaggaattttcttctccggaagcttctgtgcgattttctggttgaaaaaacgcggtttaa |
25025637 |
T |
|
| Q |
414 |
tgccgggattaaccttctcaaacgagcttatttcacgcgatgaaggattacactgtgatttcgcttgtttgttatactc |
492 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| |
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| T |
25025636 |
tgccgggattaactttctcaaacgagcttatttcacgcgacgaaggcttacactgtgattttgcttgtttgttatactc |
25025558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0268 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: scaffold0268
Description:
Target: scaffold0268; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 14 - 536
Target Start/End: Original strand, 22544 - 23066
Alignment:
| Q |
14 |
aacctcaccgacggggaacgccacttcatctctcatgtcctcgccttcttcgctgcctccgacggcatcgtccttgaaaatctcgccggtagatttatga |
113 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||| || || ||||||||||| ||||| ||||| || |||||||||||||| ||||| ||||| |||| |
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| T |
22544 |
aacctcacagacggcgaacgccacttcatctctcacgttcttgccttcttcgccgcctcagacggaattgtccttgaaaatcttgccggaagattcatga |
22643 |
T |
|
| Q |
114 |
aagaaatccaagtctccgaagcacgtgccttctacggtttccagattgcaattgaaaacatccactctgagatgtattctcttctcctcgaaacgtatat |
213 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||| || |||||| | ||||| ||||| |
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| T |
22644 |
aagaagtccaaatctccgaagcacgtgccttctatggtttccaaattgcaattgaaaacatccattctgagatgtactcccttctcattgaaacatatat |
22743 |
T |
|
| Q |
214 |
aagtgattctgctgaaaagaatcgcttatttcacgcaattgaaactattccatgtattgcnnnnnnngctgattgggcgatgaaatggatcgattcaagc |
313 |
Q |
| |
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||| ||||||||||||||||||||||||||||| |||||||| || ||||||||||| || ||||||||||| ||||||||||| ||||||||| |
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| T |
22744 |
aagcgattctgctgaaaagaatcgcttatttcatgcaattgagacaattccatgtatcgcgaaaaaggctgattgggcaatgaaatggattgattcaagc |
22843 |
T |
|
| Q |
314 |
gattcttttgcagaaagaatcgttgcatttgcttgtgttgaaggaatctttttctccggaagcttctgtgcgattttttggttgaaaaagcgtggtttaa |
413 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||||||| || |||||||||||||| || |||||||| |||||||||||||| ||||||| |
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| T |
22844 |
gattcttttgctgaaagaatcgttgcatttgcttgtgtagaaggaattttcttctccggaagcttttgcgcgattttctggttgaaaaagcgcggtttaa |
22943 |
T |
|
| Q |
414 |
tgccgggattaaccttctcaaacgagcttatttcacgcgatgaaggattacactgtgatttcgcttgtttgttatactcacttctacgaaagaagctaag |
513 |
Q |
| |
|
|||| || ||||| ||||||||||||||||||||||| || ||||| | ||||||||||| ||||||||||||||||||||||||| |||||| |||| |
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|
| T |
22944 |
tgccagggttaacattctcaaacgagcttatttcacgtgacgaaggtctgcactgtgattttgcttgtttgttatactcacttctacaaaagaaactaac |
23043 |
T |
|
| Q |
514 |
ttcagagcgcgtgaaagaaattg |
536 |
Q |
| |
|
||||||||| ||||| ||||||| |
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|
| T |
23044 |
ttcagagcgtgtgaaggaaattg |
23066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 14 - 536
Target Start/End: Complemental strand, 10197544 - 10197022
Alignment:
| Q |
14 |
aacctcaccgacggggaacgccacttcatctctcatgtcctcgccttcttcgctgcctccgacggcatcgtccttgaaaatctcgccggtagatttatga |
113 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||| || || ||||||||||| ||||| ||||| || |||||||||||||| ||||| ||||| |||| |
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|
| T |
10197544 |
aacctcacagacggcgaacgccacttcatctctcacgttcttgccttcttcgccgcctcagacggaattgtccttgaaaatcttgccggaagattcatga |
10197445 |
T |
|
| Q |
114 |
aagaaatccaagtctccgaagcacgtgccttctacggtttccagattgcaattgaaaacatccactctgagatgtattctcttctcctcgaaacgtatat |
213 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||| || |||||| | ||||| ||||| |
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|
| T |
10197444 |
aagaagtccaaatctccgaagcacgtgccttctatggtttccaaattgcaattgaaaacatccattctgagatgtactcccttctcattgaaacatatat |
10197345 |
T |
|
| Q |
214 |
aagtgattctgctgaaaagaatcgcttatttcacgcaattgaaactattccatgtattgcnnnnnnngctgattgggcgatgaaatggatcgattcaagc |
313 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| |||||||| || ||||||||||| || ||||||||||| ||||||||||| ||||||||| |
|
|
| T |
10197344 |
aagcgattctgctgaaaagaatcgcttatttcatgcaattgagacaattccatgtatcgcgaaaaaggctgattgggcaatgaaatggattgattcaagc |
10197245 |
T |
|
| Q |
314 |
gattcttttgcagaaagaatcgttgcatttgcttgtgttgaaggaatctttttctccggaagcttctgtgcgattttttggttgaaaaagcgtggtttaa |
413 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||||||| || |||||||||||||| || |||||||| |||||||||||||| ||||||| |
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|
| T |
10197244 |
gattcttttgctgaaagaatcgttgcatttgcttgtgtagaaggaattttcttctccggaagcttttgcgcgattttctggttgaaaaagcgcggtttaa |
10197145 |
T |
|
| Q |
414 |
tgccgggattaaccttctcaaacgagcttatttcacgcgatgaaggattacactgtgatttcgcttgtttgttatactcacttctacgaaagaagctaag |
513 |
Q |
| |
|
|||| || ||||| ||||||||||||||||||||||| || ||||| | ||||||||||| ||||||||||||||||||||||||| |||||| |||| |
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|
| T |
10197144 |
tgccagggttaacattctcaaacgagcttatttcacgtgacgaaggtctgcactgtgattttgcttgtttgttatactcacttctactaaagaaactaac |
10197045 |
T |
|
| Q |
514 |
ttcagagcgcgtgaaagaaattg |
536 |
Q |
| |
|
||||||||| ||||| ||||||| |
|
|
| T |
10197044 |
ttcagagcgtgtgaaggaaattg |
10197022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 5971477 - 5971517
Alignment:
| Q |
185 |
atgtattctcttctcctcgaaacgtatataagtgattctgc |
225 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
5971477 |
atgtattctcttctcctcgaaatgtatataagtgattctgc |
5971517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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