View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5180-Insertion-5 (Length: 382)
Name: NF5180-Insertion-5
Description: NF5180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5180-Insertion-5 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 35 - 382
Target Start/End: Original strand, 30417569 - 30417916
Alignment:
| Q |
35 |
gattcacacgattatatacctatctaatgaagctgcaagatgaatgatagaattatctgcttcatggtcaattttttgcaccaacttaatcaaaaacaaa |
134 |
Q |
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| T |
30417569 |
gattcacacgattatatacctatctaatgaagctgcaagatgaatgataggattatctgcttcatggtcaattttttgcaccaacttaatcaaaaacaaa |
30417668 |
T |
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| Q |
135 |
catattctgaaattatagtactccatcagattattgtttttgtcaatttcctgcatatgattaaaagctcttctcttctggcatttcaggcagagatgtc |
234 |
Q |
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| T |
30417669 |
catattctgaaattatagtactccatcagattattgtttttgtcaatttcctgcatatgattaaaagctcttctcttctggcatttcaggcagagagatc |
30417768 |
T |
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| Q |
235 |
aatcacaatagtttgaagaaaacagttataaatttgaaccacaaaccacaccaaaattgtcgccaaatcctaacacacactaatcattgtcatcagctta |
334 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30417769 |
aatcacaatagtttgaagaaaacagttataaatttgaaccacaaaccacaccaaaattgtcgccaaatcctaacacacactaatcattgtcatcagctta |
30417868 |
T |
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| Q |
335 |
aaagagagtcccttgacatattaaccaactcattaattataatcatgc |
382 |
Q |
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| T |
30417869 |
aaagagagtcccttgacatattaaccaactcattaactataatcatgc |
30417916 |
T |
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