View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5180-Insertion-7 (Length: 215)

Name: NF5180-Insertion-7
Description: NF5180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5180-Insertion-7
NF5180-Insertion-7
[»] scaffold0015 (2 HSPs)
scaffold0015 (29-215)||(32045-32231)
scaffold0015 (25-211)||(40093-40279)
[»] chr7 (1 HSPs)
chr7 (27-215)||(1420888-1421074)
[»] chr1 (15 HSPs)
chr1 (119-215)||(24233226-24233321)
chr1 (41-197)||(24227410-24227563)
chr1 (97-196)||(25610756-25610855)
chr1 (85-205)||(45692670-45692782)
chr1 (95-199)||(24513224-24513331)
chr1 (90-150)||(24233158-24233218)
chr1 (85-206)||(24626538-24626662)
chr1 (88-141)||(24242629-24242682)
chr1 (95-191)||(23895928-23896024)
chr1 (99-206)||(24634585-24634695)
chr1 (95-204)||(24221772-24221881)
chr1 (150-199)||(24629018-24629067)
chr1 (100-206)||(24804853-24804959)
chr1 (95-140)||(23898455-23898500)
chr1 (97-206)||(25869046-25869155)
[»] chr4 (1 HSPs)
chr4 (97-199)||(11033105-11033210)
[»] chr8 (1 HSPs)
chr8 (41-197)||(23772865-23773018)
[»] chr5 (1 HSPs)
chr5 (107-206)||(3181878-3181977)


Alignment Details
Target: scaffold0015 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 29 - 215
Target Start/End: Original strand, 32045 - 32231
Alignment:
Q  29 aaaagttagattgaatctcatactcaagtgataaaggacaaaatctacatcctaacaatattatagtcaaggtgatatcaaactttccacgtagactttt 128  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  32045 aaaagttagattgaatctcatactcaagtgataaaggacaacatctacatcctaataatattatagtcaaggtgatatcaaactttccacgtagactttt 32144  T
Q  129 gattctacccaattcaagtcttgaatcttcaaactctttatagtatcatttttggaatcgtaaacaacccaattcaatctacgatcc 215  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  32145 gattctacccaattcaagtcttgaatcttcaaactctttacagtatcatttttggaatcgtaaacaacccaattcaatctacgatcc 32231  T

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Target: scaffold0015; HSP #2
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 25 - 211
Target Start/End: Original strand, 40093 - 40279
Alignment:
Q  25 aaataaaagttagattgaatctcatactcaagtgataaaggacaaaatctacatcctaacaatattatagtcaaggtgatatcaaactttccacgtagac 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  40093 aaataaaagttagattgaatctcatactcaagtgataaaggacaacatctacatcctaataatattatagtcaaggtgatatcaaacttaccacgtagac 40192  T
Q  125 ttttgattctacccaattcaagtcttgaatcttcaaactctttatagtatcatttttggaatcgtaaacaacccaattcaatctacg 211  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  40193 ttttgattctacccaattcaagtcttgaatcttcaaactctttacagtatcatttttggaatcgtaaacaacccaattcaatctacg 40279  T

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Target: chr7 (Bit Score: 92; Significance: 7e-45; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 27 - 215
Target Start/End: Original strand, 1420888 - 1421074
Alignment:
Q  27 ataaaagttag-attgaatctcatactcaagtgataaaggacaaaatctacatcctaacaatattatagtcaaggtgatatcaaactttccacgtagact 125  Q
    ||||||||||| | |||||||||| ||||||||||  || |||  |||||||||||||   ||||||| ||||||||||||||||||||| || ||||||    
T  1420888 ataaaagttaggaatgaatctcattctcaagtgatgtagcacatcatctacatcctaa---tattataatcaaggtgatatcaaactttcaacatagact 1420984  T
Q  126 tttgattctacccaattcaagtcttgaatcttcaaactctttatagtatcatttttggaatcgtaaacaacccaattcaatctacgatcc 215  Q
    | ||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||| ||||||  ||| |||||| ||||||||    
T  1420985 tctgattctacccaactcaagtcttgaatcttcaaattctttatagtatcattttttgaatcataaacagtccacttcaatttacgatcc 1421074  T

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Target: chr1 (Bit Score: 61; Significance: 2e-26; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 119 - 215
Target Start/End: Original strand, 24233226 - 24233321
Alignment:
Q  119 gtagacttttgattctacccaattcaagtcttgaatcttcaaactctttatagtatcatttttggaatcgtaaacaacccaattcaatctacgatcc 215  Q
    ||||||| ||| |||||||||||||||||||||||||||||||| ||| ||||||||| ||||| |||||||||||||||| || ||||||||||||    
T  24233226 gtagactcttggttctacccaattcaagtcttgaatcttcaaacacttaatagtatca-ttttgcaatcgtaaacaacccactttaatctacgatcc 24233321  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 41 - 197
Target Start/End: Original strand, 24227410 - 24227563
Alignment:
Q  41 gaatctcatactcaagtgataaaggacaaaatctacatcctaacaatattatagtcaaggtgatatcaaactttccacgtagacttttgattctacccaa 140  Q
    ||||||||||||||||||| | || |||  |||||||||||||   |||||||  || ||||||||||||||||||||||||||   ||||| || | ||    
T  24227410 gaatctcatactcaagtgacatagcacaccatctacatcctaa---tattataaacagggtgatatcaaactttccacgtagaccgctgattttatcaaa 24227506  T
Q  141 ttcaagtcttgaatcttcaaactctttatagtatcatttttggaatcgtaaacaacc 197  Q
    | |||| ||||||||||| |||||||||| | |||||||||  ||||||||| ||||    
T  24227507 tccaagacttgaatcttcgaactctttatggaatcatttttttaatcgtaaataacc 24227563  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 97 - 196
Target Start/End: Original strand, 25610756 - 25610855
Alignment:
Q  97 aaggtgatatcaaactttccacgtagacttttgattctacccaattcaagtcttgaatcttcaaactctttatagtatcatttttggaatcgtaaacaac 196  Q
    ||||| ||||||||||||| |||||||| |||||||||||| || |||| |||| ||||||  ||||||||||||||||||||||| |||| || |||||    
T  25610756 aaggttatatcaaactttcaacgtagacatttgattctaccaaactcaaatcttcaatcttggaactctttatagtatcatttttgcaatcatacacaac 25610855  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 85 - 205
Target Start/End: Original strand, 45692670 - 45692782
Alignment:
Q  85 aatattatagtcaaggtgatatcaaactttccacgtagacttttgattctacccaattcaagtcttgaatcttcaaactctttatagtatcatttttgga 184  Q
    ||||||||| | ||||||||||||||||||  | |||||||||||| ||||||||| ||||||||||       ||| |||||||| |||||||||||||    
T  45692670 aatattataattaaggtgatatcaaactttgaatgtagacttttgaatctacccaactcaagtcttg-------aaattctttata-tatcatttttgga 45692761  T
Q  185 atcgtaaacaacccaattcaa 205  Q
    ||| ||||||||||| |||||    
T  45692762 atcataaacaacccacttcaa 45692782  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 95 - 199
Target Start/End: Complemental strand, 24513331 - 24513224
Alignment:
Q  95 tcaaggtgatatcaaactttccacgtagacttttgattctacccaattcaagtc---ttgaatcttcaaactctttatagtatcatttttggaatcgtaa 191  Q
    ||||||||||||||||||||| |||||||||||||| ||||||| |  ||| ||    ||| ||||||| ||  |||||||||||||||||||||| |||    
T  24513331 tcaaggtgatatcaaactttcaacgtagacttttgactctacccgacacaaatcattctgagtcttcaatcttattatagtatcatttttggaatcataa 24513232  T
Q  192 acaaccca 199  Q
    || |||||    
T  24513231 acgaccca 24513224  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 150
Target Start/End: Original strand, 24233158 - 24233218
Alignment:
Q  90 tatagtcaaggtgatatcaaactttccacgtagacttttgattctacccaattcaagtctt 150  Q
    |||| ||||||||||||||||||||| ||||||||||||||||| ||||||  ||||||||    
T  24233158 tataatcaaggtgatatcaaactttcaacgtagacttttgattcaacccaacccaagtctt 24233218  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 85 - 206
Target Start/End: Original strand, 24626538 - 24626662
Alignment:
Q  85 aatattatagtcaaggtgatatcaaactttccacgtagacttttgattctacccaattcaagtcttg---aatcttcaaactctttatagtatcattttt 181  Q
    ||||||||  |||||||||||| || ||||| || || |||| |||||||||||  ||||||||||    |||||| ||||||||| | ||||||||  |    
T  24626538 aatattatcatcaaggtgatattaagctttcaacatatacttctgattctacccgtttcaagtcttctttaatctttaaactctttgtggtatcattcat 24626637  T
Q  182 ggaatcgtaaacaacccaattcaat 206  Q
    ||||||||||| |||||| ||||||    
T  24626638 ggaatcgtaaaaaacccacttcaat 24626662  T

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Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 141
Target Start/End: Original strand, 24242629 - 24242682
Alignment:
Q  88 attatagtcaaggtgatatcaaactttccacgtagacttttgattctacccaat 141  Q
    |||||| ||||||||||||||||||||| ||||||| |||||||| ||||||||    
T  24242629 attataatcaaggtgatatcaaactttcaacgtagatttttgattgtacccaat 24242682  T

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Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 95 - 191
Target Start/End: Original strand, 23895928 - 23896024
Alignment:
Q  95 tcaaggtgatatcaaactttccacgtagacttttgattctacccaattcaagtcttgaatcttcaaactctttatagtatcatttttggaatcgtaa 191  Q
    |||||| |||||||||||||| || |||||  | ||||||||  || || ||||||| ||||| ||  |||||||||||||||||||||||| ||||    
T  23895928 tcaaggagatatcaaactttcaacatagacagtggattctacagaactccagtcttgcatcttgaatttctttatagtatcatttttggaattgtaa 23896024  T

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Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 206
Target Start/End: Original strand, 24634585 - 24634695
Alignment:
Q  99 ggtgatatcaaactttccacgtagacttttgattctacccaattcaagtctt---gaatcttcaaactctttatagtatcatttttggaatcgtaaacaa 195  Q
    ||||||||||||||||| |||||||||||||| |||| |  |  |||||  |   || ||||||||||  |||||||||||||||||||||| ||||| |    
T  24634585 ggtgatatcaaactttcaacgtagacttttgactctatctgacacaagttgttctgagtcttcaaactgattatagtatcatttttggaatcataaacga 24634684  T
Q  196 cccaattcaat 206  Q
    |||| ||||||    
T  24634685 cccacttcaat 24634695  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 204
Target Start/End: Original strand, 24221772 - 24221881
Alignment:
Q  95 tcaaggtgatatcaaactttccacgtagacttttgattctacccaattcaagtcttgaatcttcaaactctttatagtatcatttttggaatcgtaaaca 194  Q
    ||||||||||| |||||| || | ||||||  |||| ||||||||| | |||||||| ||||| | | |||||||||||  ||||||| |||| |||||     
T  24221772 tcaaggtgataccaaactctcaatgtagaccattgagtctacccaactgaagtcttggatcttgatagtctttatagtactatttttgcaatcataaacg 24221871  T
Q  195 acccaattca 204  Q
    ||||| ||||    
T  24221872 acccacttca 24221881  T

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Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 199
Target Start/End: Original strand, 24629018 - 24629067
Alignment:
Q  150 tgaatcttcaaactctttatagtatcatttttggaatcgtaaacaaccca 199  Q
    |||||||| |||||||||||||||| |||||| |||||| ||||||||||    
T  24629018 tgaatcttgaaactctttatagtataatttttagaatcgcaaacaaccca 24629067  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 206
Target Start/End: Original strand, 24804853 - 24804959
Alignment:
Q  100 gtgatatcaaactttccacgtagacttttgattctacccaattcaagtcttgaatcttcaaactctttatagtatcatttttggaatcgtaaacaaccca 199  Q
    |||||| |||||| || || || |||||||| |||||| || || |||||||| |||| | | || ||  |||||||||||||||||| |||||| ||||    
T  24804853 gtgataccaaactctcaacataaacttttgaatctaccaaactccagtcttgagtcttgatattccttgaagtatcatttttggaatcataaacagccca 24804952  T
Q  200 attcaat 206  Q
     ||||||    
T  24804953 tttcaat 24804959  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 23898455 - 23898500
Alignment:
Q  95 tcaaggtgatatcaaactttccacgtagacttttgattctacccaa 140  Q
    |||||||||||||||||| || |||||||||||||| | |||||||    
T  23898455 tcaaggtgatatcaaactctcaacgtagacttttgaatttacccaa 23898500  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 97 - 206
Target Start/End: Original strand, 25869046 - 25869155
Alignment:
Q  97 aaggtgatatcaaactttccacgtagacttttgattctacccaattcaagtcttgaatcttcaaactctttatagtatcatttttggaatcgtaaacaac 196  Q
    ||||||||| |||||| || |||||||  ||||| ||||||||| | ||||||| |||||| | | || || |||| | || ||||  ||||||||||||    
T  25869046 aaggtgataccaaactctcaacgtagagctttgagtctacccaactgaagtcttcaatcttgatagtccttgtagtgtgatatttgcgatcgtaaacaac 25869145  T
Q  197 ccaattcaat 206  Q
    ||| ||||||    
T  25869146 ccacttcaat 25869155  T

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Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 97 - 199
Target Start/End: Complemental strand, 11033210 - 11033105
Alignment:
Q  97 aaggtgatatcaaactttccacgtagacttttgattctacccaattcaagtct---tgaatcttcaaactctttatagtatcatttttggaatcgtaaac 193  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||   ||||||   |||||||| |||||||||||||||| |||||| |||||| ||||    
T  11033210 aaggtgatatcaaactttcaacgtagacttttgattctaaccaaccaaagtctttctgaatcttgaaactctttatagtataatttttagaatcgcaaac 11033111  T
Q  194 aaccca 199  Q
    ||||||    
T  11033110 aaccca 11033105  T

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Target: chr8 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 41 - 197
Target Start/End: Complemental strand, 23773018 - 23772865
Alignment:
Q  41 gaatctcatactcaagtgataaaggacaaaatctacatcctaacaatattatagtcaaggtgatatcaaactttccacgtagacttttgattctacccaa 140  Q
    ||||||||||||||||||| | || |||  |||||||||||||   |||||||  || ||||||||||||||||||||||||||   ||||| || | ||    
T  23773018 gaatctcatactcaagtgacatagcacaccatctacatcctaa---tattataaacagggtgatatcaaactttccacgtagaccgctgattttatcaaa 23772922  T
Q  141 ttcaagtcttgaatcttcaaactctttatagtatcatttttggaatcgtaaacaacc 197  Q
    | |||| ||||||||||| |||||||||| | |||||||||  ||||||||| ||||    
T  23772921 tccaagacttgaatcttcgaactctttatggaatcatttttttaatcgtaaataacc 23772865  T

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Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 107 - 206
Target Start/End: Complemental strand, 3181977 - 3181878
Alignment:
Q  107 caaactttccacgtagacttttgattctacccaattcaagtcttgaatcttcaaactctttatagtatcatttttggaatcgtaaacaacccaattcaat 206  Q
    |||||| || |||||||||||||||||||||||| | ||||||||| ||||   ||||||||||  | |||||| |||||||||||||||||| ||||||    
T  3181977 caaactctcaacgtagacttttgattctacccaactaaagtcttgactcttggcactctttataaaaccattttcggaatcgtaaacaacccacttcaat 3181878  T

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