View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5180_high_1 (Length: 409)
Name: NF5180_high_1
Description: NF5180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5180_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 19 - 404
Target Start/End: Complemental strand, 34097495 - 34097114
Alignment:
| Q |
19 |
atttcactagtaagagcatagtctctaatctcttctaaaaaacacaaggagtg-gttgcctggactttgaaaccaggtaaaatggtagccttccttccat |
117 |
Q |
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| T |
34097495 |
atttcactactaagagcatagtct--aatctcttctaaaaaacacaaggagaatgttgcctggactttgaaaccaggtaaaatggtagccttccttccat |
34097398 |
T |
|
| Q |
118 |
ttggacatataactacaacccataatctaataccgcctgtcttaattcgttaataaaccaattaggcctcttaattcttccttttttcctcatgagcatc |
217 |
Q |
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||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34097397 |
ttggacatataac---aacccataatctaatatcgcatgtcttaattcgttaataaaccaattaggcctcttaattcttccttttttcctcatgagcatc |
34097301 |
T |
|
| Q |
218 |
caatatatcattaaaatccctaatgatgcaccacgaaatagaaatattttgcgaaaaatcacaaataaagttccatgaatcccgctttcaactttcacta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34097300 |
caatatatcattaaaatccctaatgatgcaccacgaaatataaatattttgcgagaaatcacaaataaagttccatgaatcccgctttcaactttcacta |
34097201 |
T |
|
| Q |
318 |
ggataaccgtagtaccctatgaaatgataaatacctctacgagcatcaccaacatcagtatttgatgtgattagaagaataatctac |
404 |
Q |
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|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34097200 |
ggataaccgtagtaccctatgaaacgataaacacctctacgagcatcaccaacatcagtatttgatgtgattagaagaataatctac |
34097114 |
T |
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