View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5180_high_3 (Length: 348)
Name: NF5180_high_3
Description: NF5180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5180_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 98 - 330
Target Start/End: Original strand, 24369920 - 24370153
Alignment:
| Q |
98 |
atggcttaatcggaagaaggctagacaaagatcgcctttcgtttctcctcgaccacataagaaagttcgaggtt-ggtttggtttcttgattttcttttc |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
24369920 |
atggcttaatcggaagaaggctagacaaagatcaccttttgtttcttctcgaccacataagaaagttcaaggtttggtttggtttcttgattttcttttc |
24370019 |
T |
|
| Q |
197 |
aagagtttcttcgatgttttacatttcacacatatatgcaggtgatgatgagaagacttctaaaagaacttcatcaatcaattggccaaaggatgttaga |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
24370020 |
aagagtttcttcgatgttttacatttcacacatatatgcaggtgatgatgagaagactactaaaagaacttcatcaatgaattggccaaaggatgttaga |
24370119 |
T |
|
| Q |
297 |
gctcaggaagttgctcaaaatttcatctcatgca |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
24370120 |
gctcaggaagttgctcaaaatttcatctcatgca |
24370153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 194 - 326
Target Start/End: Original strand, 24358699 - 24358831
Alignment:
| Q |
194 |
ttcaagagtttcttcgatgttttacatttcacacatatatgcaggtgatgatgagaagacttctaaaagaacttcatcaatcaattggccaaaggatgtt |
293 |
Q |
| |
|
||||||||||||||| || |||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
24358699 |
ttcaagagtttcttctttgatttacattgcacgcatatatgcaggtgatgatgagaagactactaaaagaacttcatcaataaattggccaaaggatgtt |
24358798 |
T |
|
| Q |
294 |
agagctcaggaagttgctcaaaatttcatctca |
326 |
Q |
| |
|
||||||||| |||| |||||||||||||||||| |
|
|
| T |
24358799 |
agagctcagaaagtagctcaaaatttcatctca |
24358831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 98 - 197
Target Start/End: Original strand, 24358564 - 24358664
Alignment:
| Q |
98 |
atggcttaatcggaagaaggctagacaaagatcgcctttcgtttctcctcgaccacataagaaagttcgagg-ttggtttggtttcttgattttcttttc |
196 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
24358564 |
atggcttaattggaagaaggctaaacaaagatcacctttcgtttctcctcgaccacataaaaaagttcgaggtttggtttggtttcttgattttcttttc |
24358663 |
T |
|
| Q |
197 |
a |
197 |
Q |
| |
|
| |
|
|
| T |
24358664 |
a |
24358664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 98 - 197
Target Start/End: Complemental strand, 24364727 - 24364627
Alignment:
| Q |
98 |
atggcttaatcggaagaaggctagacaaagatcgcctttcgtttctcctcgaccacataagaaagttcgagg-ttggtttggtttcttgattttcttttc |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
24364727 |
atggcttaatcggaagaaggctagacaaagatcaccttttatttctactcgaccacataagaaagttcgaggtttggtttggtttcttgattttcttttc |
24364628 |
T |
|
| Q |
197 |
a |
197 |
Q |
| |
|
| |
|
|
| T |
24364627 |
a |
24364627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 215 - 330
Target Start/End: Complemental strand, 24364541 - 24364426
Alignment:
| Q |
215 |
ttacatttcacacatatatgcaggtgatgatgagaagacttctaaaagaacttcatcaatcaattggccaaaggatgttagagctcaggaagttgctcaa |
314 |
Q |
| |
|
||||||| |||||||||||||||| ||| ||||||||||| ||||||||||||||||||| || ||||| ||| ||| ||||||||||||||| |||||| |
|
|
| T |
24364541 |
ttacattgcacacatatatgcaggagatcatgagaagactactaaaagaacttcatcaataaactggccgaagaatgctagagctcaggaagtagctcaa |
24364442 |
T |
|
| Q |
315 |
aatttcatctcatgca |
330 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
24364441 |
aatttcatctcatgca |
24364426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 24354902 - 24354974
Alignment:
| Q |
98 |
atggcttaatcggaagaaggctagacaaagatcgcctttcgtttctcctcgaccacataagaaagttcgaggt |
170 |
Q |
| |
|
||||||||||| |||||| |||||||||||||| |||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
24354902 |
atggcttaatcagaagaatgctagacaaagatcacctttcgtttctcctcgacctcataagaaagttagaggt |
24354974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 211 - 330
Target Start/End: Original strand, 24355617 - 24355731
Alignment:
| Q |
211 |
tgttttacatttcacacatatatgcaggtgatgatgagaagacttctaaaagaacttcatcaatcaattggccaa-aggatgttagagctcaggaagttg |
309 |
Q |
| |
|
||||||| ||| ||||||||||||||||||| | |||| ||| ||||||||||||||||| |||||||| |||| | ||||||||||||||| | |
|
|
| T |
24355617 |
tgttttatattccacacatatatgcaggtgagattaagaaaactgctaaaagaacttcatca-----ttggccaagagga-gctagagctcaggaagtag |
24355710 |
T |
|
| Q |
310 |
ctcaaaatttcatctcatgca |
330 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
24355711 |
ctcaaaatttcatctcatgca |
24355731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 283
Target Start/End: Original strand, 24362479 - 24362551
Alignment:
| Q |
211 |
tgttttacatttcacacatatatgcaggtgatgatgagaagacttctaaaagaacttcatcaatcaattggcc |
283 |
Q |
| |
|
||||||| ||||||||||||||||||||||| | |||||||| || |||||||| ||||| | |||||||| |
|
|
| T |
24362479 |
tgttttatatttcacacatatatgcaggtgagattaagaagactactgaaagaactacatcattgaattggcc |
24362551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University