View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5180_high_4 (Length: 261)
Name: NF5180_high_4
Description: NF5180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5180_high_4 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 50558626 - 50558366
Alignment:
| Q |
1 |
agaaaggttctttattacgctttactaaaatgcttatcaaatttcagctttactgcaatacatgcgagaggttcttgtgtgatcggcttgtggaaggtgc |
100 |
Q |
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| T |
50558626 |
agaaaggttctttattacactttactaaaatgcttatcaaatttcagctttactgcgatacctgcgagaggttcttgtgtgatcggcttgtggaaggtac |
50558527 |
T |
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| Q |
101 |
ctgtccaactcctgggtgtgagtatggttctgcacgaggtgaccaatgcgataagtgtggaaagcttctcaatcctacagagttgaagaatcctaggtgc |
200 |
Q |
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| T |
50558526 |
ctgtccaactcctgagtgtgagtatggttctgcacgaggtgaccaatgcgataagtgtggaaagcttctcaatcctacagagttgaagaatcctaggtgc |
50558427 |
T |
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| Q |
201 |
aaggtagcaaccctctccctaaatttttgctctatgtttctgtgctgtatgtacgattttc |
261 |
Q |
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| T |
50558426 |
aaggtagcaaccctctccctaaatttttgctctatgtttctgtgctgtatgtacgattttc |
50558366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 39 - 207
Target Start/End: Complemental strand, 29773236 - 29773068
Alignment:
| Q |
39 |
aaatttcagctttactgcaatacatgcgagaggttcttgtgtgatcggcttgtggaaggtgcctgtccaactcctgggtgtgagtatggttctgcacgag |
138 |
Q |
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| T |
29773236 |
aaatttcagctttactgcgatacatgcaaaaggttcttagccgatcgacttgtggagggtacctgcccaattccagggtgtgagtatgattctgccagag |
29773137 |
T |
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| Q |
139 |
gtgaccaatgcgataagtgtggaaagcttctcaatcctacagagttgaagaatcctaggtgcaaggtag |
207 |
Q |
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| T |
29773136 |
gggatcagtgtgagaactgtggcaaccttctaaatccgacagaattgaagattcccaagtgcaaggtag |
29773068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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